Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30884
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1136 + 34369994-34370312,34370398-34370550,34370648-343707... 134 1e-31
02_01_0046 - 311752-312138,312220-312372,312458-312653,312702-31... 29 3.3
04_03_0431 - 15858381-15858529,15858864-15858935,15859045-158591... 29 4.4
04_03_0421 - 15725045-15725193,15725528-15725599,15725709-157257... 29 4.4
01_07_0258 - 42350630-42350716,42351031-42351081,42351166-423511... 29 4.4
01_06_1430 - 37309737-37309946,37310049-37310100,37310348-373104... 29 4.4
03_04_0163 + 17865529-17865801,17866030-17866102,17866251-17866270 29 5.8
01_04_0100 + 16017117-16017196,16017283-16017694 29 5.8
07_03_0799 - 21587003-21587040,21588262-21588658 28 7.7
01_06_0997 + 33676441-33676758,33678223-33678314,33678443-336785... 28 7.7
>02_05_1136 +
34369994-34370312,34370398-34370550,34370648-34370745,
34371563-34371784
Length = 263
Score = 134 bits (323), Expect = 1e-31
Identities = 56/85 (65%), Positives = 75/85 (88%)
Frame = +3
Query: 255 DRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLD 434
DRN+SMGMNL +M+K+L+CAG+ D +TIKA D +D VTF+FESPNQ+K++D+EMKLM++D
Sbjct: 63 DRNLSMGMNLNNMAKMLRCAGNDDIITIKADDGSDTVTFMFESPNQDKIADFEMKLMDID 122
Query: 435 LEHLGIPETEYSCTIRMPSSEFARI 509
EHLGIP++EY +RMPSSEF+RI
Sbjct: 123 SEHLGIPDSEYQAIVRMPSSEFSRI 147
Score = 88.2 bits (209), Expect = 7e-18
Identities = 41/85 (48%), Positives = 57/85 (67%)
Frame = +2
Query: 509 CRDLSQFGESMVISCTKEGVKFSATGDIGSANVKLAQTASIDKXXXXXXXXXXXXXTLTF 688
C+DLS G++++IS TKEGVKFS GDIG+AN+ Q ++DK +LTF
Sbjct: 148 CKDLSSIGDTVIISVTKEGVKFSTAGDIGTANIVCRQNKTVDKPEDATIIEMQEPVSLTF 207
Query: 689 ACQYLNYFTKATSLSPQVQLSMSAE 763
A +Y+N FTKA+ LS QV +S+S+E
Sbjct: 208 ALRYMNSFTKASPLSEQVTISLSSE 232
Score = 83.0 bits (196), Expect = 3e-16
Identities = 37/61 (60%), Positives = 49/61 (80%)
Frame = +1
Query: 70 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 249
M E RL++ S+LKKVLEAI++L+T A FDC G LQAMD+SHV+LV+L LR++GF+ Y
Sbjct: 1 MLELRLVQGSLLKKVLEAIRELVTDANFDCSGTGFSLQAMDSSHVALVALLLRSEGFEHY 60
Query: 250 R 252
R
Sbjct: 61 R 61
>02_01_0046 -
311752-312138,312220-312372,312458-312653,312702-312792,
312808-313228
Length = 415
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 483 MPSSEFARIAGISHSLENQW*FH 551
MP S AR A +SHS N W FH
Sbjct: 1 MPMSAAARAACLSHSFLNSWRFH 23
>04_03_0431 -
15858381-15858529,15858864-15858935,15859045-15859120,
15860651-15860734
Length = 126
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +3
Query: 417 KLMNLDLEHLGIPETEYSC--TIRMPSSEFARIAGI-SHSLENQW*FHAQK 560
KL+ DLE+ I TEY+C +I++ + + +H++ + W FH QK
Sbjct: 60 KLVVYDLENQVIGWTEYNCSSSIKIKDEQTGATYTVDAHNISSGWRFHWQK 110
>04_03_0421 -
15725045-15725193,15725528-15725599,15725709-15725784,
15728607-15728679,15728919-15728983,15729423-15729681,
15729761-15729931,15730014-15730846,15731097-15731390,
15731469-15731939
Length = 820
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +3
Query: 417 KLMNLDLEHLGIPETEYSC--TIRMPSSEFARIAGI-SHSLENQW*FHAQK 560
KL+ DLE+ I TEY+C +I++ + + +H++ + W FH QK
Sbjct: 754 KLVVYDLENQVIGWTEYNCSSSIKIKDEQTGATYTVDAHNISSGWRFHWQK 804
>01_07_0258 -
42350630-42350716,42351031-42351081,42351166-42351198,
42351338-42351430,42351547-42351639,42351717-42351812,
42351911-42351967,42352047-42352148,42352317-42352502,
42352650-42352916
Length = 354
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 112 VLEAIKDLLTQATFDCDDNGIQLQAMDNS-HVSLVSLTLRADGFDKYRW 255
VL A+KD +T +D N + LQA+ + + +VSL GF +Y W
Sbjct: 192 VLIAVKDKVTIGQWDKVKNIVYLQALKIALRIRVVSLMQIMAGFQEYIW 240
>01_06_1430 -
37309737-37309946,37310049-37310100,37310348-37310427,
37310538-37310606,37310710-37310843,37311173-37311332,
37311483-37311554,37312113-37312246,37312386-37312521,
37313273-37313416
Length = 396
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 288 SMSKILKCAGDK-DTVTIKAQDNADNVTFVFESPNQEKV 401
S+ K+ G K + +++K Q ADN+ F FE P ++ V
Sbjct: 238 SLEKVFSEVGSKSEMLSVKLQREADNLLFNFEEPLKDYV 276
>03_04_0163 + 17865529-17865801,17866030-17866102,17866251-17866270
Length = 121
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +2
Query: 713 TKATSLSPQVQLS-MSAEFLWWWS 781
TKA VQ S M AEF+WWWS
Sbjct: 58 TKAGRRGTPVQGSHMLAEFVWWWS 81
>01_04_0100 + 16017117-16017196,16017283-16017694
Length = 163
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +2
Query: 713 TKATSLSPQVQLS-MSAEFLWWWS 781
TKA VQ S MSAE +WWWS
Sbjct: 126 TKADRRGTLVQGSHMSAELVWWWS 149
>07_03_0799 - 21587003-21587040,21588262-21588658
Length = 144
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 713 TKATSLSPQVQLS-MSAEFLWWWS 781
+KA+ VQ S MSAE +WWWS
Sbjct: 97 SKASQRGMPVQGSYMSAELVWWWS 120
>01_06_0997 +
33676441-33676758,33678223-33678314,33678443-33678540,
33678824-33678979,33679106-33679731,33679826-33679896,
33679987-33680241,33680337-33680454,33680595-33680766,
33680854-33681395
Length = 815
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +2
Query: 713 TKATSLSPQVQ-LSMSAEFLWWWS 781
TKA VQ MSAE +WWWS
Sbjct: 73 TKAGRRGTPVQGFHMSAELVWWWS 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,055,818
Number of Sequences: 37544
Number of extensions: 374297
Number of successful extensions: 903
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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