Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30884
         (812 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23876| Best HMM Match : PCNA_C (HMM E-Value=0)                     116   2e-26
SB_36449| Best HMM Match : RnaseH (HMM E-Value=0.92)                   29   4.5  
SB_36498| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-14)                 29   5.9  
SB_24408| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-17)                 29   5.9  
SB_38600| Best HMM Match : Ank (HMM E-Value=6.9e-36)                   29   5.9  
SB_33734| Best HMM Match : ELMO_CED12 (HMM E-Value=4.4e-33)            29   5.9  

>SB_23876| Best HMM Match : PCNA_C (HMM E-Value=0)
          Length = 225

 Score =  116 bits (279), Expect = 2e-26
 Identities = 50/85 (58%), Positives = 66/85 (77%)
 Frame = +3

Query: 255 DRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLD 434
           DR +S+GM    +SKI+KCAG++D +TI A+D  D VTF FESPN+EK S+Y+MKLM++D
Sbjct: 24  DRTLSIGMKTSLLSKIIKCAGNEDRITIHAEDTGDTVTFSFESPNEEKTSEYKMKLMDID 83

Query: 435 LEHLGIPETEYSCTIRMPSSEFARI 509
            EHLGIP+  Y   I+MPS+EF RI
Sbjct: 84  SEHLGIPDQTYDAVIKMPSAEFQRI 108



 Score = 84.6 bits (200), Expect = 9e-17
 Identities = 39/85 (45%), Positives = 54/85 (63%)
 Frame = +2

Query: 509 CRDLSQFGESMVISCTKEGVKFSATGDIGSANVKLAQTASIDKXXXXXXXXXXXXXTLTF 688
           CRDLSQ G+S+ I+CTK+G+ F+ +G+ GS  V L Q AS+DK              LTF
Sbjct: 109 CRDLSQMGDSVQIACTKDGIDFTVSGESGSGKVHLKQNASVDKESEEISIELNEAVNLTF 168

Query: 689 ACQYLNYFTKATSLSPQVQLSMSAE 763
           A +Y+N+F+KAT LS  V LS+  +
Sbjct: 169 ALRYMNFFSKATPLSSSVTLSLKKD 193



 Score = 37.1 bits (82), Expect = 0.017
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = +1

Query: 187 MDNSHVSLVSLTLRADGFDKYR 252
           MD+SHV LVS+ L ADGFD YR
Sbjct: 1   MDSSHVCLVSVQLNADGFDPYR 22


>SB_36449| Best HMM Match : RnaseH (HMM E-Value=0.92)
          Length = 655

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = +1

Query: 43  IEVIH*NINMFEARLLRSSILKKVLEAIKDLLTQA-TFDCDDNGIQLQAMDNSHVSLVSL 219
           ++VI    N  + + L    L+ +LEA+K+LL Q+ +F C+++ ++L  ++  H+S  SL
Sbjct: 14  LQVIQAITNYLDKKELEVDKLQAILEAVKNLLNQSLSFLCEES-LRL-PINKDHLSFSSL 71


>SB_36498| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-14)
          Length = 596

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/55 (23%), Positives = 32/55 (58%)
 Frame = +2

Query: 146 PLSIAMTMEFSYRLWTTLMCLSCHSLSELMALTSTAG*EHLNGHESRQHVKDSQM 310
           P+ I++T+ F Y +   L+  + +++  + +  S     H+NGH +R+ ++D ++
Sbjct: 429 PVKISLTLFFIYIILPLLIMSAAYTVIMIRSRAS-----HINGHGARERLRDKKL 478


>SB_24408| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-17)
          Length = 439

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/55 (23%), Positives = 32/55 (58%)
 Frame = +2

Query: 146 PLSIAMTMEFSYRLWTTLMCLSCHSLSELMALTSTAG*EHLNGHESRQHVKDSQM 310
           P+ I++T+ F Y +   L+  + +++  + +  S     H+NGH +R+ ++D ++
Sbjct: 232 PVKISLTLFFIYIILPLLIMSAAYTVIMIRSRAS-----HINGHGARERLRDKKL 281


>SB_38600| Best HMM Match : Ank (HMM E-Value=6.9e-36)
          Length = 852

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 512 GNSSKFRTWHANSAAVFSLWNT*MFKIQIHKLHLV 408
           GN S   TW  NS AV  +WN  M  + +H   +V
Sbjct: 352 GNHSAEETWKLNSKAVAIIWNA-MKLVSVHPQWIV 385


>SB_33734| Best HMM Match : ELMO_CED12 (HMM E-Value=4.4e-33)
          Length = 535

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 393 EKVSDYEMKLMNLDLEHLGIPETEYSCTIRMPSSEF 500
           E + + EMKL  LDLE++ IPE+  +     P+ +F
Sbjct: 496 ETLLNMEMKLRLLDLENISIPESPPAIPPEPPNYDF 531


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,255,497
Number of Sequences: 59808
Number of extensions: 439893
Number of successful extensions: 1014
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)