Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30884
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna (prolife...    87   1e-17
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    30   2.3  

>AF000298-1|AAC48257.2|  229|Caenorhabditis elegans Pcna
           (proliferating cell nuclearantigen) homolog protein 1
           protein.
          Length = 229

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 36/85 (42%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
 Frame = +3

Query: 255 DRNISMGMNLGSMSKILKCAGDKDTVTIKAQDN-ADNVTFVFESPNQEKVSDYEMKLMNL 431
           DR I++G++L +MSK LKCA + DT  +K ++N  D++ F F  P ++K  D  +K+M++
Sbjct: 29  DRTINLGLSLANMSKALKCANNDDTCMLKYEENEGDSIIFTFADPKRDKTQDVTVKMMDI 88

Query: 432 DLEHLGIPETEYSCTIRMPSSEFAR 506
           D EHLGIP+ +Y+    MP+ EF +
Sbjct: 89  DSEHLGIPDQDYAVVCEMPAGEFQK 113



 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 31/82 (37%), Positives = 50/82 (60%)
 Frame = +2

Query: 509 CRDLSQFGESMVISCTKEGVKFSATGDIGSANVKLAQTASIDKXXXXXXXXXXXXXTLTF 688
           C+DLS F +S+ I+ TK G+ F+  GDIGS+ V  + +++ D               + F
Sbjct: 115 CKDLSTFSDSLNITATKAGIVFTGKGDIGSSVVTYSPSSNTDDETEAVTLEVKDPVNVNF 174

Query: 689 ACQYLNYFTKATSLSPQVQLSM 754
           + +Y+N FTKAT+LS +V+LS+
Sbjct: 175 SIKYMNQFTKATALSDRVRLSL 196



 Score = 36.3 bits (80), Expect = 0.026
 Identities = 17/27 (62%), Positives = 20/27 (74%)
 Frame = +1

Query: 172 IQLQAMDNSHVSLVSLTLRADGFDKYR 252
           + LQAMD+SHV+LVSL L    FD YR
Sbjct: 1   MSLQAMDSSHVALVSLKLEVGLFDTYR 27


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 413 LVIRDFLLIWALKNKCDIVSIILCFYCNCIL 321
           ++  DF L++     C  VS   C++C+C +
Sbjct: 82  VIFSDFSLVYIFHGPCKYVSPWFCYFCHCFM 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,612,404
Number of Sequences: 27780
Number of extensions: 334130
Number of successful extensions: 909
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)