Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30884
         (812 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29570.1 68415.m03591 proliferating cell nuclear antigen 2 (P...   133   1e-31
At1g07370.1 68414.m00786 proliferating cell nuclear antigen 1 (P...   133   1e-31
At2g36960.2 68415.m04533 myb family transcription factor contain...    31   1.2  
At2g36960.1 68415.m04532 myb family transcription factor contain...    31   1.2  
At1g22160.1 68414.m02770 senescence-associated protein-related s...    29   4.9  
At5g54067.1 68418.m06729 expressed protein low similarity to VIV...    28   6.4  

>At2g29570.1 68415.m03591 proliferating cell nuclear antigen 2
           (PCNA2) identical to SP|Q9ZW35 Proliferating cell
           nuclear antigen 2 (PCNA 2) {Arabidopsis thaliana};
           nearly identical to SP|Q43124 Proliferating cell nuclear
           antigen (PCNA) {Brassica napus}; contains Pfam profiles
           PF00705: Proliferating cell nuclear antigen N-terminal
           domain, PF02747: Proliferating cell nuclear antigen
           C-terminal domain
          Length = 264

 Score =  133 bits (322), Expect = 1e-31
 Identities = 57/85 (67%), Positives = 73/85 (85%)
 Frame = +3

Query: 255 DRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLD 434
           DRN+SMGMNLG+MSK+LKCAG+ D +TIKA D +D VTF+FESP Q+K++D+EMKLM++D
Sbjct: 63  DRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKIADFEMKLMDID 122

Query: 435 LEHLGIPETEYSCTIRMPSSEFARI 509
            EHLGIP+ EY   +RMPS EF+RI
Sbjct: 123 SEHLGIPDAEYHSIVRMPSGEFSRI 147



 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 42/85 (49%), Positives = 57/85 (67%)
 Frame = +2

Query: 509 CRDLSQFGESMVISCTKEGVKFSATGDIGSANVKLAQTASIDKXXXXXXXXXXXXXTLTF 688
           C+DLS  G+++VIS TKEGVKFS  GDIG+AN+ L Q  ++DK             +L+F
Sbjct: 148 CKDLSSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMNEPVSLSF 207

Query: 689 ACQYLNYFTKATSLSPQVQLSMSAE 763
           A +Y+N FTKAT LS  V +S+S+E
Sbjct: 208 ALRYMNSFTKATPLSETVTISLSSE 232



 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 38/61 (62%), Positives = 48/61 (78%)
 Frame = +1

Query: 70  MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 249
           M E RL++ S+LKKVLEA+KDL+  A FDC   G  LQAMD+SHV+LVSL LR++GF+ Y
Sbjct: 1   MLELRLVQGSLLKKVLEAVKDLVNDANFDCSTTGFSLQAMDSSHVALVSLLLRSEGFEHY 60

Query: 250 R 252
           R
Sbjct: 61  R 61


>At1g07370.1 68414.m00786 proliferating cell nuclear antigen 1
           (PCNA1) identical to SP|Q9M7Q7 Proliferating cellular
           nuclear antigen 1 (PCNA 1) {Arabidopsis thaliana};
           nearly identical to SP|Q43124 Proliferating cell nuclear
           antigen (PCNA) {Brassica napus}; contains Pfam profiles
           PF00705: Proliferating cell nuclear antigen N-terminal
           domain, PF02747: Proliferating cell nuclear antigen
           C-terminal domain
          Length = 263

 Score =  133 bits (322), Expect = 1e-31
 Identities = 57/85 (67%), Positives = 73/85 (85%)
 Frame = +3

Query: 255 DRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLD 434
           DRN+SMGMNLG+MSK+LKCAG+ D +TIKA D  D VTF+FESP Q+K++D+EMKLM++D
Sbjct: 63  DRNLSMGMNLGNMSKMLKCAGNDDIITIKADDGGDTVTFMFESPTQDKIADFEMKLMDID 122

Query: 435 LEHLGIPETEYSCTIRMPSSEFARI 509
            EHLGIP+ EY   +RMPS+EF+RI
Sbjct: 123 SEHLGIPDAEYHSIVRMPSNEFSRI 147



 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 42/85 (49%), Positives = 57/85 (67%)
 Frame = +2

Query: 509 CRDLSQFGESMVISCTKEGVKFSATGDIGSANVKLAQTASIDKXXXXXXXXXXXXXTLTF 688
           C+DLS  G+++VIS TKEGVKFS  GDIG+AN+ L Q  ++DK             +L+F
Sbjct: 148 CKDLSSIGDTVVISVTKEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMKEPVSLSF 207

Query: 689 ACQYLNYFTKATSLSPQVQLSMSAE 763
           A +Y+N FTKAT LS  V +S+S+E
Sbjct: 208 ALRYMNSFTKATPLSDTVTISLSSE 232



 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 38/61 (62%), Positives = 48/61 (78%)
 Frame = +1

Query: 70  MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 249
           M E RL++ S+LKKVLE+IKDL+  A FDC   G  LQAMD+SHV+LVSL LR++GF+ Y
Sbjct: 1   MLELRLVQGSLLKKVLESIKDLVNDANFDCSSTGFSLQAMDSSHVALVSLLLRSEGFEHY 60

Query: 250 R 252
           R
Sbjct: 61  R 61


>At2g36960.2 68415.m04533 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 741

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 121 AIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFD 243
           +I DLL++   D D +G+   A + SH  L  +   +D FD
Sbjct: 529 SIGDLLSEVPDDIDSDGVDPPATEGSHYLLRDVPFTSDSFD 569


>At2g36960.1 68415.m04532 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 743

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 121 AIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFD 243
           +I DLL++   D D +G+   A + SH  L  +   +D FD
Sbjct: 531 SIGDLLSEVPDDIDSDGVDPPATEGSHYLLRDVPFTSDSFD 571


>At1g22160.1 68414.m02770 senescence-associated protein-related
           similar to senescence-associated protein SAG102
           (GI:22331931) [Arabidopsis thaliana]
          Length = 147

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 315 GDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMNLDLEH 443
           G +    IK   +   + F    P++++ SD++++L+N+D EH
Sbjct: 4   GKRQRPPIKRTTSLSEIKFDLNQPSEQEPSDHQIQLVNVD-EH 45


>At5g54067.1 68418.m06729 expressed protein low similarity to
           VIVIPAROUS1 protein from [Triticum aestivum] GI:7801372,
           [Hordeum vulgare subsp. vulgare] GI:1730475
          Length = 126

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 124 IKDLLTQATFDCDD--NGIQLQAMDNSHVSLVSLTLRADGFDKYRWIGTSQWA 276
           +  +LT+   +  D  NG+++Q  D     L ++TL+  G DK ++   + W+
Sbjct: 33  VMSVLTRMNVNDQDLLNGVEVQVDDIMEDDLYTVTLKVSGIDKPKYYFGTGWS 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,579,925
Number of Sequences: 28952
Number of extensions: 307238
Number of successful extensions: 810
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)