Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30883
         (811 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    22   6.6  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   6.6  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    22   6.6  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   6.6  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    21   8.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.8  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = -3

Query: 257 GTNDQLTLTTTNWYQRVNSL-DTSLHRLTHRHTGNDTWRLNTDPHTGFRVDWSLAINRVS 81
           G+ D     T N YQ  +++ +  L  L   + G+D  R     +    VD  +A  RV 
Sbjct: 144 GSGDFHDSCTVNNYQDASNVRNCELVGLADLNQGSDYVRSKIIEYMNHLVDLGVAGFRVD 203

Query: 80  QSVYYTPKDL 51
            + +  P DL
Sbjct: 204 AAKHMWPADL 213


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = -3

Query: 257 GTNDQLTLTTTNWYQRVNSL-DTSLHRLTHRHTGNDTWRLNTDPHTGFRVDWSLAINRVS 81
           G+ D     T N YQ  +++ +  L  L   + G+D  R     +    VD  +A  RV 
Sbjct: 145 GSGDFHDSCTVNNYQDASNVRNCELVGLADLNQGSDYVRSKIIEYMNHLVDLGVAGFRVD 204

Query: 80  QSVYYTPKDL 51
            + +  P DL
Sbjct: 205 AAKHMWPADL 214


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = -3

Query: 257 GTNDQLTLTTTNWYQRVNSL-DTSLHRLTHRHTGNDTWRLNTDPHTGFRVDWSLAINRVS 81
           G+ D     T N YQ  +++ +  L  L   + G+D  R     +    VD  +A  RV 
Sbjct: 145 GSGDFHDSCTVNNYQDASNVRNCELVGLADLNQGSDYVRSKIIEYMNHLVDLGVAGFRVD 204

Query: 80  QSVYYTPKDL 51
            + +  P DL
Sbjct: 205 AAKHMWPADL 214


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 79  KASTTRPRICSPTGTSTIAPVRLT 8
           + S + PRI SP+ T + +P  LT
Sbjct: 64  RKSPSSPRISSPSSTKSGSPGFLT 87


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 175 RTDTRGMIPGALIPTLIRDFVSI 107
           R  +RG+IP A + T+   FV +
Sbjct: 235 RASSRGLIPRAKVKTIKITFVIV 257


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 454 SGGRHNDCVVDGTSISQSLHNLSYSRPLLSNG 359
           SGG H       T  S   H+L+ S  LLS+G
Sbjct: 202 SGGMHQMANYS-TDYSSLTHSLAASNHLLSSG 232


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,911
Number of Sequences: 336
Number of extensions: 4547
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)