Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30883
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   140   2e-34
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    61   2e-10
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    48   2e-06
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    27   4.2  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.2  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    26   5.5  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    26   5.5  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.3  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.6  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    25   9.6  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    25   9.6  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        25   9.6  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   9.6  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  140 bits (340), Expect = 2e-34
 Identities = 66/84 (78%), Positives = 74/84 (88%)
 Frame = +3

Query: 3   DIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREP 182
           ++VKRT  IVDVPVGE +LGRVVDALGNPIDGKGPI T  R RV +KAPGI+PR SV EP
Sbjct: 114 EVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGPIKTTERRRVQLKAPGILPRTSVCEP 173

Query: 183 MQTGIKAVDSLVPIGRGQRELIIG 254
           MQTG+KA+DS+VPIGRGQRELIIG
Sbjct: 174 MQTGLKAIDSMVPIGRGQRELIIG 197



 Score =  132 bits (319), Expect = 6e-32
 Identities = 57/86 (66%), Positives = 76/86 (88%)
 Frame = +2

Query: 257 RQTGKTALAIDTIINQQRFNKGEDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINYTI 436
           RQTGKTA+A+DTI+N +R+N   DE KKLYC+YVA+GQKRSTVAQ+V++L +  ++ Y+I
Sbjct: 199 RQTGKTAIALDTILNHKRWNNSSDESKKLYCVYVAVGQKRSTVAQLVQKLEENDSLKYSI 258

Query: 437 IVSATASDAAPLQYLAPYSGCAMGNF 514
           IV+ATAS++APLQYLAP+SGCAMG +
Sbjct: 259 IVAATASESAPLQYLAPFSGCAMGEW 284



 Score = 93.5 bits (222), Expect = 3e-20
 Identities = 44/47 (93%), Positives = 44/47 (93%)
 Frame = +3

Query: 624 YPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPT 764
           YPGDVFYLHSRLLERAAKMS K GGGSLTALPVIETQ GDVSAYIPT
Sbjct: 322 YPGDVFYLHSRLLERAAKMSPKHGGGSLTALPVIETQGGDVSAYIPT 368



 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 34/39 (87%), Positives = 37/39 (94%)
 Frame = +1

Query: 505 G*FFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGRE 621
           G +FRDNGKH L++YDDLSKQAVAYRQMSLLLRRPPGRE
Sbjct: 282 GEWFRDNGKHGLVVYDDLSKQAVAYRQMSLLLRRPPGRE 320



 Score = 33.5 bits (73), Expect = 0.036
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = +2

Query: 764 NVISITDGQIFLETEL 811
           NVISITDGQIFLE+EL
Sbjct: 369 NVISITDGQIFLESEL 384


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 28/79 (35%), Positives = 44/79 (55%)
 Frame = +3

Query: 18  TGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGI 197
           TG+ + +PVG   LGR+++ +G P+D +GPI       +   AP    + +  E ++TGI
Sbjct: 125 TGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGI 184

Query: 198 KAVDSLVPIGRGQRELIIG 254
           K VD L P  RG +  + G
Sbjct: 185 KVVDLLAPYARGGKIGLFG 203


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
 Frame = +3

Query: 18  TGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIP--RVSVREPMQT 191
           TG  + +PV E +LGRV +  G PID KGP +  +   + I    I P  R+   E +QT
Sbjct: 92  TGHSMRIPVSEDMLGRVFNGSGLPID-KGP-NLLAEDYLDINGSPINPYARIYPEEMIQT 149

Query: 192 GIKAVDSLVPIGRGQR 239
           GI ++D L  I RGQ+
Sbjct: 150 GISSIDGLNSIARGQK 165



 Score = 31.5 bits (68), Expect = 0.15
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 585 DVSTAASS-PRP*GYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIP 761
           +VS A    P   GYPG ++   S + ERA ++  +   GS+T +P++     D++  IP
Sbjct: 287 EVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGR--NGSITQIPILTMPNDDITHPIP 344



 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 529 KHALIIYDDLSKQAVAYRQMSLLLRRPPGR 618
           KH L I  D++  A A R++S      PGR
Sbjct: 269 KHVLTILTDMTSYADALREVSAAREEVPGR 298


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -3

Query: 254 TNDQLTLTTTNWYQRVNSLDTSLHRLTHRHTGNDTWRLNTDPHTGF 117
           TN +L + + N   + ++   S+   T  HTG+ T  +  +P+TGF
Sbjct: 164 TNKKLIIQSNNTSSQHSTPPLSISD-TSTHTGSSTDNVEANPNTGF 208


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 556 LSKQAVAYRQMSLLLRRPP 612
           LSK+A+ YR+  L L+RPP
Sbjct: 102 LSKRALHYRRKRLALKRPP 120


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 191 SLHRLTHRHTGNDTWRLNTDPHTGFR 114
           SLH  T  H  +D  R N+DP +  R
Sbjct: 428 SLHDSTTSHNKSDLMRTNSDPQSAMR 453


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 511 FFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPP 612
           ++RD GK+  ++ D  S+ A A R++S  L   P
Sbjct: 344 YYRDQGKNVSMMADSTSRWAEALREISGRLAEMP 377


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 412 CWCHQLHNHCVCHRFRCCS 468
           C+   LHN C+ + +R CS
Sbjct: 722 CFASLLHNCCIFYAYRACS 740


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -1

Query: 517 GKITHGTTRVRSQVLQGSSIGSGGRHNDCVVDGTSISQSLHNLSYS 380
           G++T      + +    S   +G R + C+V      QS+H LS S
Sbjct: 56  GRVTFAVLPTKPKDEVTSMKANGSRQSSCIVSNARKRQSVHCLSRS 101


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 67  TRPRICSPTGTSTIAP 20
           TRPR+ +P+ +ST+ P
Sbjct: 55  TRPRVSAPSSSSTVVP 70


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 143 LNTDPHTGFRVDWSLAINRVSQSVYYTPKDLLSDGNVY 30
           ++TD  T  +V+ SL  +R S  VY    DLL   N Y
Sbjct: 397 VDTDKMTDVKVEKSLESSRKSLPVYQYKDDLLKAINEY 434


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
 Frame = -1

Query: 331 LIFTLVESLLVDDSINSQGSLTSLTVPMINSR*PRPIG-TRESTALIPVCIGSRTDTRGM 155
           L+  ++E     D I+S  ++ S    ++ S  P     T++ ++LI +    +      
Sbjct: 288 LLINVIEECSNSDLIHSGTNVVSSQPNVVESHVPPSSNDTKQESSLIDLM---KLTEEPA 344

Query: 154 IPGALIPTLIRDFVSIGPLPSIGFPKASTTRPRICSPTGTSTIAP 20
           +P   +PT +    S+  L S+    +ST+   + SP+ +    P
Sbjct: 345 VPSPSLPTNVPANQSLSMLSSLSNSMSSTSNGALNSPSYSQAAIP 389


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 487 LLWLCHG*FFRDNGKHALIIYDDLSKQAV 573
           L W+C    FR++GKH ++   D  K+A+
Sbjct: 158 LAWIC----FRESGKHWMVSALDAEKRAI 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,476,396
Number of Sequences: 5004
Number of extensions: 73791
Number of successful extensions: 215
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)