Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30883
(811 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 48 1e-05
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 42 4e-04
05_06_0198 + 26300872-26301519,26302939-26303028,26303118-26303189 33 0.36
11_06_0224 + 21447875-21448944,21449465-21449624 30 1.9
02_05_0091 + 25745971-25746050,25746196-25746439,25746542-257466... 29 4.4
11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861 29 5.8
09_04_0215 - 15716832-15717699,15717809-15717938,15718038-15718173 29 5.8
03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376 29 5.8
04_04_0991 - 29969162-29969912,29970097-29970368 28 7.6
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/77 (32%), Positives = 40/77 (51%)
Frame = +3
Query: 9 VKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQ 188
V+ TG ++ PV +LGR+ + G PID PI ++ + + + R E +Q
Sbjct: 126 VQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQ 185
Query: 189 TGIKAVDSLVPIGRGQR 239
TGI +D + I RGQ+
Sbjct: 186 TGISTIDVMNSIARGQK 202
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 526 GKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 618
GKH L+I D+S A A R++S PGR
Sbjct: 307 GKHVLVILTDMSSYADALREVSAAREEVPGR 337
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 585 DVSTAASS-PRP*GYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIP 761
+VS A P GYPG ++ + + ERA ++ + GS+T +P++ D++ P
Sbjct: 326 EVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGR--SGSITQIPILTMPNDDITHPTP 383
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 42.3 bits (95), Expect = 4e-04
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Frame = +3
Query: 9 VKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTK-----SRMRVGIKAPG--IIP-- 161
V+ TG ++ PV +LGRV + G PID PI + S +G G I P
Sbjct: 86 VQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPILPEAYLDISDFDIGFAGAGSSINPSE 145
Query: 162 RVSVREPMQTGIKAVDSLVPIGRGQR 239
R E +QTGI +D + I RGQ+
Sbjct: 146 RTYPEEMIQTGISTIDVMNSIARGQK 171
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 526 GKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 618
GKH L+I D+S A A R++S PGR
Sbjct: 277 GKHVLVILTDMSSYADALREVSAAREEVPGR 307
>05_06_0198 + 26300872-26301519,26302939-26303028,26303118-26303189
Length = 269
Score = 32.7 bits (71), Expect = 0.36
Identities = 26/62 (41%), Positives = 30/62 (48%)
Frame = +3
Query: 537 PYHLRRFVQTSRSLPSDVSTAASSPRP*GYPGDVFYLHSRLLERAAKMSDKMGGGSLTAL 716
P H RR VQT S SD + A S+P P P + SRLL AA + GG L L
Sbjct: 28 PRHRRRRVQTLSSSSSDAAAAPSTPPPVWPPASL----SRLL--AAALRGGRAGGELPDL 81
Query: 717 PV 722
V
Sbjct: 82 AV 83
>11_06_0224 + 21447875-21448944,21449465-21449624
Length = 409
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 380 TVAQIV-KRLTDAGAINYTIIVSATASDAAPLQYLAPYSGCAMGNFSVIMANTPLSSTTI 556
T A+IV L GAI ++I SATA +P +P SG A G F ++ A +S TT+
Sbjct: 192 TWAKIVGTALCLGGAITMSVIQSATAPPYSP----SPSSGWAAGCFCLLGAVVVVSCTTV 247
>02_05_0091 +
25745971-25746050,25746196-25746439,25746542-25746628,
25747060-25747245,25747527-25747904
Length = 324
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +2
Query: 386 AQIVKRLTDAGAINYTIIVSATASDAAPLQYLAPYSGCAMGNFSVIMANTPLSSTTICPN 565
+Q VK L +G ++ I +D + + L + G F++++ N + TTI P
Sbjct: 64 SQAVKALEQSG-LSGVIFHQLDVTDRSSIMLLVEFIRTKFGKFNILVNNAAIGGTTIDPE 122
Query: 566 K 568
+
Sbjct: 123 R 123
>11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861
Length = 592
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 138 IKAPGIIPRVSVREPMQTGIKAVDSL-VPIGRG 233
I + G++P +S+R +TG + D L P+GRG
Sbjct: 511 IHSNGVVPSLSLRHAGETGGRGGDGLATPVGRG 543
>09_04_0215 - 15716832-15717699,15717809-15717938,15718038-15718173
Length = 377
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 323 EDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINY 430
EDE + + +Y+AIG + +T+A + TD NY
Sbjct: 73 EDEDRLICSLYIAIGSRWATIAAQLPGRTDNDIKNY 108
>03_02_0805 + 11382631-11384747,11385012-11385095,11385181-11385376
Length = 798
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 529 CHYHGKITHGTTRVRSQVLQGSSIGSGGRHNDCVVD 422
C Y GK+ G S + SSI G H C+VD
Sbjct: 444 CSYTGKVKEGREIFNSMTVN-SSIRPGAEHYSCMVD 478
>04_04_0991 - 29969162-29969912,29970097-29970368
Length = 340
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 305 QRFNKGEDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINY 430
+R N +DE++ + ++ A+G K ST+A + TD NY
Sbjct: 69 RRGNFSDDEERLIIRLHAALGNKWSTIATHLDGRTDNEIKNY 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,399,284
Number of Sequences: 37544
Number of extensions: 561809
Number of successful extensions: 1373
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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