Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30883
         (811 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   7.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   7.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   7.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 152 TWRLNTDPHTGFRVDWSLAINR 87
           T +L+TDP+T F+V+ S  I R
Sbjct: 680 TEKLSTDPNTHFQVNQSHGIKR 701


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 531 TRPYHLRRFVQTSRSLPSDVSTAASSPRP*GYPGDVFYLHSRL 659
           T P H++++VQ    L + +STA       GY  D +  H +L
Sbjct: 314 TVPLHMQKYVQMIHDLHTRISTAIDL----GYVVDSYGNHVKL 352


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 531 TRPYHLRRFVQTSRSLPSDVSTAASSPRP*GYPGDVFYLHSRL 659
           T P H++++VQ    L + +STA       GY  D +  H +L
Sbjct: 314 TVPLHMQKYVQMIHDLHTRISTAIDL----GYVVDSYGNHVKL 352


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 573 YGLFGQIVVDDKGVFAIITEKLP 505
           Y  FG+I+  +  +F+ +T K P
Sbjct: 346 YSSFGKILATEPTLFSNVTPKFP 368


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 570 RSLPSDVSTAASSPRP*GYPGD 635
           + +   + TA  +P P G PGD
Sbjct: 319 QKIAESMKTARENPGPPGVPGD 340


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 570 RSLPSDVSTAASSPRP*GYPGD 635
           + +   + TA  +P P G PGD
Sbjct: 319 QKIAESMKTARENPGPPGVPGD 340


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 570 RSLPSDVSTAASSPRP*GYPGD 635
           + +   + TA  +P P G PGD
Sbjct: 258 QKIAESMKTARENPGPPGVPGD 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,758
Number of Sequences: 438
Number of extensions: 5443
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)