Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30883
(811 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 128 3e-30
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 66 3e-11
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 66 3e-11
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 66 3e-11
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 48 1e-05
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 48 1e-05
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 48 1e-05
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 48 1e-05
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 48 1e-05
At3g58920.1 68416.m06566 F-box family protein contains F-box dom... 29 4.8
At1g59780.1 68414.m06731 disease resistance protein (CC-NBS-LRR ... 28 6.4
At5g65510.1 68418.m08241 ovule development protein, putative sim... 28 8.4
At5g11540.1 68418.m01346 FAD-binding domain-containing protein s... 28 8.4
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 128 bits (310), Expect = 3e-30
Identities = 60/84 (71%), Positives = 71/84 (84%)
Frame = +3
Query: 3 DIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREP 182
D+VKRTG+IVDVP G+ +LGRVVDA+G PIDGKG + + RV +KAPGI+ R SV EP
Sbjct: 358 DLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGALSDHEQRRVEVKAPGILERKSVHEP 417
Query: 183 MQTGIKAVDSLVPIGRGQRELIIG 254
MQTG+KAVDSLVPIGRGQREL+IG
Sbjct: 418 MQTGLKAVDSLVPIGRGQRELLIG 441
Score = 122 bits (294), Expect = 3e-28
Identities = 54/87 (62%), Positives = 72/87 (82%), Gaps = 1/87 (1%)
Frame = +2
Query: 257 RQTGKTALAIDTIINQQRFN-KGEDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINYT 433
RQTGKT +AIDTI+NQ++ N + E + +YC+YVAIGQKRSTV Q+++ L +A A+ Y+
Sbjct: 443 RQTGKTTIAIDTILNQKQINSRATSESETMYCVYVAIGQKRSTVGQLIQTLEEANALEYS 502
Query: 434 IIVSATASDAAPLQYLAPYSGCAMGNF 514
I+V+ATASD APLQ+LAPYSGCAMG +
Sbjct: 503 ILVAATASDPAPLQFLAPYSGCAMGEY 529
Score = 90.2 bits (214), Expect = 1e-18
Identities = 42/47 (89%), Positives = 44/47 (93%)
Frame = +3
Query: 624 YPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPT 764
+PGDVFYLHSRLLERAAK SD+ G GSLTALPVIETQAGDVSAYIPT
Sbjct: 567 FPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPT 613
Score = 78.2 bits (184), Expect = 6e-15
Identities = 36/39 (92%), Positives = 37/39 (94%)
Frame = +1
Query: 505 G*FFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGRE 621
G +FRDNG HALIIYDDLSKQAVAYRQMSLLLRRPPGRE
Sbjct: 527 GEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGRE 565
Score = 31.9 bits (69), Expect = 0.52
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +2
Query: 764 NVISITDGQIFLETEL 811
NVISITDGQI LETEL
Sbjct: 614 NVISITDGQICLETEL 629
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 65.7 bits (153), Expect = 3e-11
Identities = 33/82 (40%), Positives = 48/82 (58%)
Frame = +3
Query: 9 VKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQ 188
V TGA + VPVG LGR+++ LG PID +G I T+ + + AP ++ + +E +
Sbjct: 150 VLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILA 209
Query: 189 TGIKAVDSLVPIGRGQRELIIG 254
TGIK VD L P RG + + G
Sbjct: 210 TGIKVVDLLAPYQRGGKIGLFG 231
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 65.7 bits (153), Expect = 3e-11
Identities = 33/82 (40%), Positives = 48/82 (58%)
Frame = +3
Query: 9 VKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQ 188
V TGA + VPVG LGR+++ LG PID +G I T+ + + AP ++ + +E +
Sbjct: 153 VLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILA 212
Query: 189 TGIKAVDSLVPIGRGQRELIIG 254
TGIK VD L P RG + + G
Sbjct: 213 TGIKVVDLLAPYQRGGKIGLFG 234
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 65.7 bits (153), Expect = 3e-11
Identities = 33/82 (40%), Positives = 48/82 (58%)
Frame = +3
Query: 9 VKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQ 188
V TGA + VPVG LGR+++ LG PID +G I T+ + + AP ++ + +E +
Sbjct: 150 VLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILA 209
Query: 189 TGIKAVDSLVPIGRGQRELIIG 254
TGIK VD L P RG + + G
Sbjct: 210 TGIKVVDLLAPYQRGGKIGLFG 231
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/77 (32%), Positives = 40/77 (51%)
Frame = +3
Query: 9 VKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQ 188
V+ TG ++ PV +LGR+ + G PID PI ++ + + + R E +Q
Sbjct: 85 VQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQ 144
Query: 189 TGIKAVDSLVPIGRGQR 239
TGI +D + I RGQ+
Sbjct: 145 TGISTIDVMNSIARGQK 161
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 526 GKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 618
GKH L+I D+S A A R++S PGR
Sbjct: 267 GKHVLVILTDMSSYADALREVSAAREEVPGR 297
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 585 DVSTAASS-PRP*GYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIP 761
+VS A P GYPG ++ + + ERA ++ + GS+T +P++ D++ P
Sbjct: 286 EVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRK--GSITQIPILTMPNDDITHPTP 343
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/77 (32%), Positives = 40/77 (51%)
Frame = +3
Query: 9 VKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQ 188
V+ TG ++ PV +LGR+ + G PID PI ++ + + + R E +Q
Sbjct: 85 VQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQ 144
Query: 189 TGIKAVDSLVPIGRGQR 239
TGI +D + I RGQ+
Sbjct: 145 TGISTIDVMNSIARGQK 161
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 526 GKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 618
GKH L+I D+S A A R++S PGR
Sbjct: 267 GKHVLVILTDMSSYADALREVSAAREEVPGR 297
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 585 DVSTAASS-PRP*GYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIP 761
+VS A P GYPG ++ + + ERA ++ + GS+T +P++ D++ P
Sbjct: 286 EVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRK--GSITQIPILTMPNDDITHPTP 343
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/77 (32%), Positives = 40/77 (51%)
Frame = +3
Query: 9 VKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQ 188
V+ TG ++ PV +LGR+ + G PID PI ++ + + + R E +Q
Sbjct: 84 VQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQ 143
Query: 189 TGIKAVDSLVPIGRGQR 239
TGI +D + I RGQ+
Sbjct: 144 TGISTIDVMNSIARGQK 160
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 526 GKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 618
GKH L+I D+S A A R++S PGR
Sbjct: 266 GKHVLVILTDMSSYADALREVSAAREEVPGR 296
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 585 DVSTAASS-PRP*GYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIP 761
+VS A P GYPG ++ + + ERA ++ + GS+T +P++ D++ P
Sbjct: 285 EVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRK--GSITQIPILTMPNDDITHPTP 342
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/77 (32%), Positives = 40/77 (51%)
Frame = +3
Query: 9 VKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQ 188
V+ TG ++ PV +LGR+ + G PID PI ++ + + + R E +Q
Sbjct: 84 VQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQ 143
Query: 189 TGIKAVDSLVPIGRGQR 239
TGI +D + I RGQ+
Sbjct: 144 TGISTIDVMNSIARGQK 160
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/77 (32%), Positives = 40/77 (51%)
Frame = +3
Query: 9 VKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQ 188
V+ TG ++ PV +LGR+ + G PID PI ++ + + + R E +Q
Sbjct: 84 VQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQ 143
Query: 189 TGIKAVDSLVPIGRGQR 239
TGI +D + I RGQ+
Sbjct: 144 TGISTIDVMNSIARGQK 160
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 526 GKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 618
GKH L+I D+S A A R++S PGR
Sbjct: 267 GKHVLVILTDMSSYADALREVSAAREEVPGR 297
>At3g58920.1 68416.m06566 F-box family protein contains F-box domain
Pfam:PF00646
Length = 470
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -1
Query: 328 IFTLVESLLVDDSINSQGSLTSLTVPMINSR*PRPIGTRES 206
+FT+V+ L DDS+ +QGSL + +N P+ TR S
Sbjct: 37 LFTIVQKLEFDDSVKNQGSL----MDFVNGVLALPVTTRIS 73
>At1g59780.1 68414.m06731 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 906
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 529 KHALIIYDDLSKQAVAYRQMSLLLRRPPGREVILVTCS-IFTPVCLSVPLRCLT 687
K ALI++DDL K+ YR + R G +V+L + + P C++ LT
Sbjct: 260 KKALIVFDDLWKREDWYRIAPMFPERKAGWKVLLTSRNDAIHPHCVTFKPELLT 313
>At5g65510.1 68418.m08241 ovule development protein, putative
similar to AINTEGUMENTA (GI:1209099) [Arabidopsis
thaliana]
Length = 437
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 502 GTTRVRSQVLQGSSIGSGGRHNDCVVDGTSISQSLHNLSYSRPLLSN 362
G T + S V++ S+ G + DC G +S ++N S +PL N
Sbjct: 91 GGTHLSSHVVESSTTAKLGFNGDCTTTGGVLSLGVNNTS-DQPLSCN 136
>At5g11540.1 68418.m01346 FAD-binding domain-containing protein
similar to hypothetical protein [Oryza sativa
(japonica)][GI:18844891]; contains PF01565 FAD binding
domain
Length = 585
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 364 WTEEVYCSSNCEEID*CWCHQLHNHCVCHRFRCCSPA 474
W++E+ + + D C L +CVC R C+P+
Sbjct: 525 WSDEILLGTEASKYDGC---ALEGNCVCSEERHCNPS 558
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,787,518
Number of Sequences: 28952
Number of extensions: 414731
Number of successful extensions: 1035
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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