Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30881
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    27   3.5  
SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr ...    26   6.1  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    25   8.1  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    25   8.1  

>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 690 LVPLNHHAFSRSELVLVNFLD 628
           + PLNHH FS +  VL+   D
Sbjct: 749 MTPLNHHFFSLATCVLIGVFD 769


>SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
 Frame = +3

Query: 612 DYIEQSQESLPGQVQIEKT---HDDSREQEL 695
           D +EQS+ESL  QV + ++    D++R QEL
Sbjct: 78  DQLEQSEESLEKQVDVLRSSMEKDETRIQEL 108


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 342 RWCRWLKKRQRHSIIFFLACTPT*TALHHKTLTIVAKLIKWFCLRR 205
           R+  +LK R +  ++  +A TPT    H K +T + K    FC  R
Sbjct: 334 RFVEYLKTRMK--VLHVIAETPTSFLQHVKDITFIDKKPLRFCAER 377


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 325 QPTTPTRLINWTKSMGINLKATDS 396
           +P    R +NWT  + + LKATD+
Sbjct: 153 KPKIVERSVNWTTELLLALKATDA 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,438
Number of Sequences: 5004
Number of extensions: 45859
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)