Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30881
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0050 - 536390-537231,538108-538375                               31   1.2  
03_02_0438 + 8470290-8470378,8470900-8470990,8471074-8471134,847...    29   3.7  
07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026     29   4.8  
03_06_0574 + 34825075-34825362,34825635-34825683,34825847-348260...    29   4.8  
01_05_0535 - 23001864-23005052                                         28   8.5  

>04_01_0050 - 536390-537231,538108-538375
          Length = 369

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = +1

Query: 298 NNRMPLSFFQPTTPTRLINWTKSMGINLKATDSICQFHFKEEHIKMYDKIKIGEVI 465
           N  +    F    P R++ WT   GI       +   H + EH+ ++  IK   ++
Sbjct: 107 NGSLDRQLFPKEKPGRILGWTTRYGIVTDIAAGLHYVHHEHEHMVLHRDIKASNIL 162


>03_02_0438 +
           8470290-8470378,8470900-8470990,8471074-8471134,
           8471678-8471755,8471891-8471964,8472689-8472802,
           8472881-8472988,8473937-8473975,8474046-8474132
          Length = 246

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 531 HPLLDQQQSIL-KVQELLIDPQNSCYSTDYIEQSQESLPGQVQIEKTHDDS 680
           HP   +  + L K Q+LL+DPQ   Y  D +  ++E L  + + E   D +
Sbjct: 72  HPKAQEAFAALAKAQQLLLDPQERGYILDQVTAAKEELRAKRKKELKKDSA 122


>07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026
          Length = 961

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 193 HINLSP*TEPFN*FCHYGQSFVVKSCSSGRTGKKKNNRMPLSFFQPTTP 339
           H+   P    FN    +G   V K+   G  GK++  +  ++  QPTTP
Sbjct: 273 HMVTRPIKFKFNPLDPFGLDDVNKAGPGGEKGKERKGKQSMTVAQPTTP 321


>03_06_0574 +
           34825075-34825362,34825635-34825683,34825847-34826021,
           34826118-34826188,34826764-34827491
          Length = 436

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 224 NGSV*GDKLIW-DWYYMCSLNYSEYH 150
           NG++ G   IW DW++  +LNY+  H
Sbjct: 115 NGTIDGQGAIWWDWFHSNTLNYTRPH 140


>01_05_0535 - 23001864-23005052
          Length = 1062

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 331 TTPTR-LINWTKSMGINLKATDSICQF 408
           TTP R LI W   M +  K  D+IC F
Sbjct: 232 TTPVRDLITWNALMSVYAKRGDAICTF 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,830,213
Number of Sequences: 37544
Number of extensions: 241122
Number of successful extensions: 531
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)