Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30881
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52076| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_3815| Best HMM Match : zf-MYND (HMM E-Value=1.3e-11)                29   4.9  
SB_53502| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_43645| Best HMM Match : MpPF26 (HMM E-Value=3)                      28   6.5  
SB_30265| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_22955| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_22074| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)                     28   8.6  

>SB_52076| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +1

Query: 214 TEPFN*FCHYGQSFVVKSCSSGRTGKKKNNRMPLSFFQPTTPTRLI--NWTKSMGINLKA 387
           T+P   + +   SF +   ++       N   PL+ +  TTP+  +  N T+ + +N   
Sbjct: 346 TQPLAMYPNTTPSFAMNPNTTQPLAMYPNTTQPLAMYPNTTPSLAMNPNTTQPLSMNPNT 405

Query: 388 TDSICQFHFKEEHIKMY 438
           T S+  + +  + + MY
Sbjct: 406 TQSLAMYPYTTQSLFMY 422


>SB_3815| Best HMM Match : zf-MYND (HMM E-Value=1.3e-11)
          Length = 281

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +1

Query: 385 ATDSICQFHFKEEHIKMYDKIKIGEVIYFSYLLKKVLKEEACQQLSINFILY 540
           A +S+  F+    +IK  ++I +GE +  SY+ +   +E   ++L   F  Y
Sbjct: 196 APNSVAVFNGTNIYIKALEEIPVGEELTISYIQQLHPRETRQEELQTQFCFY 247


>SB_53502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +3

Query: 612 DYIEQSQESLP---GQVQIEKTHDDSREQELIESI 707
           DY E S+  +P    Q  IEK H D R+QE+ +++
Sbjct: 220 DYYEDSEPEVPIYNRQELIEKYHSDERQQEVEKNV 254


>SB_43645| Best HMM Match : MpPF26 (HMM E-Value=3)
          Length = 168

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +1

Query: 340 TRLINWTKSMGINLKATDSICQFHFK--EEHIKMYDKIKIGEVIYFSYLLKKVLKEEACQ 513
           TR+  WT+  GI L +T +I    F    + +K +     G++I + +LL   L   A  
Sbjct: 79  TRMEGWTRIFGIVLASTGAITMMLFSSVRDAVKDFLHPTYGDIIGYCFLLGNTLCMTAYV 138

Query: 514 QLSINFI 534
            +   FI
Sbjct: 139 LIQKKFI 145


>SB_30265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 625 CSM*SVE*QLFCGSISSSCTLRILCCWSSKG 533
           C   SVE  + CGS S +CT  ++ C +S G
Sbjct: 178 CVATSVEEMVTCGSRSITCTQELITCTTSFG 208


>SB_22955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 51

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 235 CHYGQSFVVKSCSSGRTGKKK 297
           CHYGQS VV + + GR   ++
Sbjct: 2   CHYGQSLVVTAMAEGRQAARE 22


>SB_22074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 572

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 235 CHYGQSFVVKSCSSGRTGKKK 297
           CHYGQS VV + + GR   ++
Sbjct: 523 CHYGQSLVVTAMAEGRQAARE 543


>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
          Length = 662

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +3

Query: 483 KESTKGRSLPTIEHQFHPLLDQQQSILKVQELLIDPQNSCYSTDYIEQSQESLPGQVQIE 662
           + +T+ +SLP  + Q HP   QQQ      + L+  Q         +  Q+ LPGQ Q  
Sbjct: 193 EHATQPQSLPDQQQQQHPGHQQQQ---HPGQSLLGQQPQSGPGQLGQSLQQQLPGQQQQN 249

Query: 663 KTHDDSREQE 692
                S +Q+
Sbjct: 250 PGQQQSNQQQ 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,779,484
Number of Sequences: 59808
Number of extensions: 302026
Number of successful extensions: 731
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)