Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30881
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z93388-1|CAB07658.1|  355|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AF063007-7|AAC16428.1|  659|Caenorhabditis elegans Hypothetical
           protein R119.5 protein.
          Length = 659

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 331 TTP-TRLINWTKSMGINLKATDSICQFHFKEEHIKMYDKIKIGEVIYFSYLLKKVL 495
           TTP    + W +     LK  D I    F E H   YD+I +G V   S LLK++L
Sbjct: 135 TTPEASSVGWARP---ELKVCD-ITDVKFLEAHQNRYDRIFVGFVADDSQLLKRML 186


>Z93388-1|CAB07658.1|  355|Caenorhabditis elegans Hypothetical
           protein T10C6.1 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +1

Query: 316 SFFQPTTP--TRLINWTKSMGINLKATDSICQFHFKEEHIKMYDKIKIGEVIYFSYLLKK 489
           SFF P     T++INW   +G+      S C   F  E++ ++  +K       SYLL K
Sbjct: 191 SFFYPQLADGTKVINWDSFIGMAF----STCIL-FGSEYLMLFYAVK-------SYLLTK 238

Query: 490 VLKEEACQQL 519
            L + AC  +
Sbjct: 239 TLMQSACSAI 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,116,206
Number of Sequences: 27780
Number of extensions: 251123
Number of successful extensions: 701
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)