Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30881
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00720.1 68417.m00098 shaggy-related protein kinase theta / A...    29   2.3  
At4g06744.1 68417.m01106 leucine-rich repeat family protein / ex...    28   5.3  
At2g47460.1 68415.m05923 myb family transcription factor (MYB12)...    27   9.3  
At1g26830.1 68414.m03270 cullin, putative similar to Cullin homo...    27   9.3  

>At4g00720.1 68417.m00098 shaggy-related protein kinase theta /
           ASK-theta (ASK8) identical to shaggy-related protein
           kinase theta (ASK-theta) [Arabidopsis thaliana]
           SWISS-PROT:Q96287
          Length = 472

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = +3

Query: 540 LDQQQSILKVQELLIDPQNSCYSTDYIEQSQESLPGQVQI----EKTHDDSREQELIE 701
           LDQ+   L V  + +D  +SC+       SQES+ G   +    EK  DD     +IE
Sbjct: 32  LDQENDNLCVDPMQVDQNSSCFEMKADVLSQESVAGTSNVPAVSEKPVDDQLPDVMIE 89


>At4g06744.1 68417.m01106 leucine-rich repeat family protein /
           extensin family protein similar to leucine-rich
           repeat/extensin 1 (GI:13809918) {Arabidopsis thaliana};
           contains Pfam PF00560: Leucine Rich Repeat domains
          Length = 404

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 307 FDYFFSCLYAHLNSSSPQNF 248
           F  FFSC Y+H++SSS   F
Sbjct: 377 FHSFFSCRYSHISSSSSSAF 396


>At2g47460.1 68415.m05923 myb family transcription factor (MYB12)
           similar to myb-related DNA-binding protein GI:1020155
           from [Arabidopsis thaliana]
          Length = 371

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 560 PQGTGTTNRSAEQLLFYRLHRTKSRKFTRTSSDRE 664
           PQ      R++   +  ++HRTK+RK  +TS+  E
Sbjct: 144 PQAKRRLGRTSRSAMKPKIHRTKTRKTKKTSAPPE 178


>At1g26830.1 68414.m03270 cullin, putative similar to Cullin homolog
           3 (CUL-3) SP:Q13618, GI:3639052 from [Homo sapiens];
           contains Pfam profile PF00888: Cullin family
          Length = 732

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +3

Query: 534 PLLDQQQSILKVQELLIDPQNSCYSTDYIEQSQESLPGQVQIEKTHDDSREQELIESI 707
           P LD      KV+    +   SC   DY+++S++ L  +++    + D++ +E I S+
Sbjct: 199 PFLDASSEFYKVESQ--EFIESCDCGDYLKKSEKRLTEEIERVAHYLDAKSEEKITSV 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,019,269
Number of Sequences: 28952
Number of extensions: 221362
Number of successful extensions: 617
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)