Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30879
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 155 6e-39
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 98 1e-21
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 94 2e-20
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 87 3e-18
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 80 3e-16
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 79 5e-16
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 79 5e-16
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 79 7e-16
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 71 1e-13
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 71 2e-13
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 69 1e-12
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 68 1e-12
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 65 9e-12
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 46 6e-06
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 32 0.077
SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||... 27 2.9
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 5.1
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 6.7
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 26 6.7
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 26 6.7
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 6.7
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 25 8.9
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 155 bits (376), Expect = 6e-39
Identities = 66/85 (77%), Positives = 75/85 (88%)
Frame = +3
Query: 252 SPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGG 431
SP +N+M+WNAVI GP DTPFEDGTFKL + F E+YPNKPP V+FVS MFHPNVYA+G
Sbjct: 27 SPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGE 86
Query: 432 ICLDILQNRWSPTYDVSAILTSIQS 506
+CLDILQNRWSPTYDV+AILTSIQS
Sbjct: 87 LCLDILQNRWSPTYDVAAILTSIQS 111
Score = 49.6 bits (113), Expect = 5e-07
Identities = 21/38 (55%), Positives = 31/38 (81%)
Frame = +2
Query: 506 ILSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSF 619
+L+DPN SPAN+ AAQL++EN++EY +RV+ VE S+
Sbjct: 112 LLNDPNNASPANAEAAQLHRENKKEYVRRVRKTVEDSW 149
Score = 49.2 bits (112), Expect = 6e-07
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +1
Query: 175 MSTPARRRLMRDFKRLQEDPPTGVSGA 255
MST ARRRLMRDFKR+Q+DPP GVS +
Sbjct: 1 MSTTARRRLMRDFKRMQQDPPAGVSAS 27
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 97.9 bits (233), Expect = 1e-21
Identities = 39/88 (44%), Positives = 58/88 (65%)
Frame = +3
Query: 243 CVRSPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYA 422
C P +++ W A I GP D+P+ G F L+I F +YP KPP V F ++++HPN+ +
Sbjct: 21 CSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINS 80
Query: 423 DGGICLDILQNRWSPTYDVSAILTSIQS 506
+G ICLDIL+++WSP +S +L SI S
Sbjct: 81 NGSICLDILRDQWSPALTISKVLLSICS 108
Score = 30.7 bits (66), Expect = 0.24
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 506 ILSDPNPNSPANSMAAQLYKENRREYE 586
+L+DPNP+ P A +YK +R YE
Sbjct: 109 LLTDPNPDDPLVPEIAHVYKTDRSRYE 135
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 93.9 bits (223), Expect = 2e-20
Identities = 40/83 (48%), Positives = 55/83 (66%)
Frame = +3
Query: 258 TDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGGIC 437
+D+N++ W I GP DT +E FK+++ F YP PPT+ F S M+HPNV G IC
Sbjct: 54 SDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNIC 113
Query: 438 LDILQNRWSPTYDVSAILTSIQS 506
LDIL+++WS Y+V IL S+QS
Sbjct: 114 LDILKDKWSAVYNVQTILLSLQS 136
Score = 29.1 bits (62), Expect = 0.72
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 506 ILSDPNPNSPANSMAAQLYKENRREYEK 589
+L +PN SP N+ AA+L+ ++ EY++
Sbjct: 137 LLGEPNNASPLNAQAAELWSKDPIEYKR 164
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 86.6 bits (205), Expect = 3e-18
Identities = 39/97 (40%), Positives = 57/97 (58%)
Frame = +3
Query: 216 TLTRGSTYRCVRSPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVS 395
TLTR V +PT++N+ + + GP + +E G F L + +EYP PP VRF++
Sbjct: 13 TLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLT 72
Query: 396 KMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQS 506
K++HPNV G ICL L+ WSP + +L SIQ+
Sbjct: 73 KIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQA 109
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +2
Query: 506 ILSDPNPNSPANSMAAQLYKEN 571
++ PNP+ P ++ A+++KEN
Sbjct: 110 LMGAPNPDDPLDNDVAKIWKEN 131
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 80.2 bits (189), Expect = 3e-16
Identities = 38/89 (42%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Frame = +3
Query: 243 CVRSPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYA 422
C S ++M W I G T +E G +KLT+ F EEYP +PP RF +FHPNVY
Sbjct: 29 CKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYP 88
Query: 423 DGGICLDIL--QNRWSPTYDVSAILTSIQ 503
G +CL IL + W P + IL IQ
Sbjct: 89 SGTVCLSILNEEEGWKPAITIKQILLGIQ 117
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +2
Query: 506 ILSDPNPNSPANSMAAQLYKENRREYEKRVKA 601
+L DPN SPA + A ++K+++ EYEKRV+A
Sbjct: 119 LLDDPNIASPAQTEAYTMFKKDKVEYEKRVRA 150
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 79.4 bits (187), Expect = 5e-16
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 13/95 (13%)
Frame = +3
Query: 261 DNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGGICL 440
+++ W+ +I GP TPFE G + T++F +YP PPT++F + FHPNVY DG +C+
Sbjct: 32 EDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCI 91
Query: 441 DIL-------------QNRWSPTYDVSAILTSIQS 506
IL RWSP V IL S+ S
Sbjct: 92 SILHAPGDDPNMYESSSERWSPVQSVEKILLSVMS 126
Score = 29.1 bits (62), Expect = 0.72
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +2
Query: 506 ILSDPNPNSPANSMAAQLYKENRREYEKRVK 598
+L++PN S AN A ++++E+R EY + V+
Sbjct: 127 MLAEPNDESGANIDACKMWREDREEYCRVVR 157
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 187 ARRRLMRDFKRLQEDPPTGVS 249
A RRLM+++K L E+ P G++
Sbjct: 6 ALRRLMKEYKELTENGPDGIT 26
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 79.4 bits (187), Expect = 5e-16
Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Frame = +3
Query: 297 GPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYAD-GGICLDILQNRWSPTY 473
GP TP+E G F + IE +YP +PP + F +K++HPNV + G ICLDIL+++WSP Y
Sbjct: 42 GPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVY 101
Query: 474 DVSAILTSIQSF*VIP 521
+ + L S+QS P
Sbjct: 102 TMKSALISLQSLLCTP 117
Score = 26.6 bits (56), Expect = 3.8
Identities = 8/31 (25%), Positives = 20/31 (64%)
Frame = +2
Query: 506 ILSDPNPNSPANSMAAQLYKENRREYEKRVK 598
+L P P++P ++ AQ+Y +N +++ + +
Sbjct: 113 LLCTPEPSNPQDAQVAQVYLQNYQQFVRTAR 143
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 79.0 bits (186), Expect = 7e-16
Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Frame = +3
Query: 258 TDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNV-YADGGI 434
TD ++ W AVI GP +TP+E G + L I E YP PP+V F +K+ HPN+ + +G +
Sbjct: 30 TDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEV 89
Query: 435 CLDILQNRWSPTYDVSAILTSIQS 506
C+DIL+ WSP + + + +I S
Sbjct: 90 CMDILKTHWSPAWSLQSACLAIIS 113
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 71.3 bits (167), Expect = 1e-13
Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = +3
Query: 261 DNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNV-YADGGIC 437
++N+ + GP +TP+ G +K+ +E EYP K P++ FV+++FHPN+ G +C
Sbjct: 26 NDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVC 85
Query: 438 LDILQNRWSPTYDV 479
LD++ WSP +D+
Sbjct: 86 LDVINQTWSPMFDM 99
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 70.9 bits (166), Expect = 2e-13
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Frame = +3
Query: 261 DNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGGICL 440
D +I W +I GP DT +E G F T+ F ++YP PP ++F ++++HPNV+ +G +C+
Sbjct: 32 DKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCI 91
Query: 441 DILQ-------------NRWSPTYDVSAILTSIQS 506
IL RW P + IL S+ S
Sbjct: 92 SILHPPGDDKYGYEDAGERWLPVHSPETILISVIS 126
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +2
Query: 506 ILSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQS 616
+LS PN SPAN AA+ ++EN +E++KRV+ V +S
Sbjct: 127 MLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRRS 163
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 68.5 bits (160), Expect = 1e-12
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +3
Query: 261 DNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGGICL 440
D+N+ W GP D+ + G F +++F +YP +PPT+ F ++++HPN ++G +CL
Sbjct: 33 DDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCL 92
Query: 441 DIL-QNRWSPTYDVSAILTSI 500
IL Q + P+ + ++L I
Sbjct: 93 AILKQQVFKPSIKLRSVLEQI 113
Score = 30.7 bits (66), Expect = 0.24
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 506 ILSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQ 613
+L +PNP+ P + A+ Y+ +R ++K + VEQ
Sbjct: 116 LLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQ 151
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 68.1 bits (159), Expect = 1e-12
Identities = 24/68 (35%), Positives = 46/68 (67%)
Frame = +3
Query: 300 PHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGGICLDILQNRWSPTYDV 479
P + ++ G FK I+ + YP+ PP V+ ++K++HPN+ +G +CL+IL+ W+P ++
Sbjct: 60 PDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNL 119
Query: 480 SAILTSIQ 503
++IL +Q
Sbjct: 120 NSILVGLQ 127
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 65.3 bits (152), Expect = 9e-12
Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Frame = +3
Query: 255 PTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFV--SKMFHPNVYADG 428
P NI+ W+ +I GP DTP+E G + T+ F +YP KPP +R + S F N
Sbjct: 29 PATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITPSGRFQTNT---- 84
Query: 429 GICL---DILQNRWSPTYDVSAILTSIQSF*VIPTQTLQQIRWPHSFTRRIDENTKR 590
+CL D W+P++ VS IL + SF T I S R ++TKR
Sbjct: 85 RLCLSFSDFHPKSWNPSWMVSTILVGLVSFMTSDEITTGGIVTSESTRRTYAKDTKR 141
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 46.0 bits (104), Expect = 6e-06
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +3
Query: 261 DNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGGIC- 437
D + WNA I GP + E+ + L I YP+ PP V FVS++ P V + G
Sbjct: 35 DITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKVN 94
Query: 438 ---LDILQNRWSPTYDVSAILTSIQ 503
+D L++ W Y + +L ++
Sbjct: 95 PHKIDCLRH-WKREYSMETVLLDLK 118
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 32.3 bits (70), Expect = 0.077
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 154 FYHNEIFLLLSWSNFDTVIQKLCITNVRIKWTFL 53
FY FL S NFDT+++K IT+ + W F+
Sbjct: 491 FYEFLCFLRPSLINFDTILRKSAITSFSVLWDFI 524
>SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 280
Score = 27.1 bits (57), Expect = 2.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 321 DGTFKLTIEFTEEYPNKPPTV 383
D + +L I+F +YPN PTV
Sbjct: 38 DSSVRLNIQFPLDYPNSAPTV 58
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -2
Query: 341 CEFECSIFKWSIMRAKYHSIPDHNIVISW--APDTPVGG 231
C FE ++SI + +HNI++ W P +GG
Sbjct: 1629 CNFESDDIQYSIDVVYSRKLKEHNIILWWNKGPTPDLGG 1667
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = -1
Query: 720 HSHSNECMYTPVSSATLLDV-TLTNKVSSVPC 628
+SHS + M++P SS ++ + ++ NK +SVPC
Sbjct: 909 YSHS-KLMFSPFSSQRIILLYSIINKETSVPC 939
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 542 SMAAQLYKENRREYEKRVKACVEQSFID*QGTLLTLFVSVTSNSV 676
S+ +LY R + R+KA + Q T TLFV+V + +
Sbjct: 316 SVVKELYVHVSRRFMLRIKAAITQMIYKKVLTSKTLFVAVDGSKI 360
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 1 LPCGRDD*IFMEFLDNDKEKSTLFVRS 81
+ C D I+ FLDN + T+F+++
Sbjct: 825 ITCNEDSHIWTNFLDNASQNKTIFLQN 851
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -3
Query: 457 LFCRISRQIPPSA*TFG*NIFDTNRTVGGLFGYSSVNS 344
LF R ++ P++ FD + T+GG+ G +S+++
Sbjct: 396 LFVRNGARLGPTSIYHAWKAFDVDSTIGGMCGKTSIDT 433
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -3
Query: 394 DTNRTVGGLFGYSSVNSIVSL 332
D+ +VG +FG+SSV + VSL
Sbjct: 134 DSGNSVGEIFGHSSVVNAVSL 154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,385,179
Number of Sequences: 5004
Number of extensions: 75585
Number of successful extensions: 225
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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