Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30879
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    28   0.083
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          25   0.77 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.4  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   7.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.5  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 0.083
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 729 YNLHSHSNECMYTPVSSATLLDVTLTNKVSSVPC*SINDCST 604
           Y+ H+      Y P SS+ L + T  + +   P   I+DCST
Sbjct: 387 YSKHNTQQFTQYIPESSSNLQEKTKIDLLEIPPIRKISDCST 428


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
 Frame = +2

Query: 419 RRWWNLPRYPAK-------QMESYL*CFSYTYFYTVILSDPNPNSPANSMA--AQLYKEN 571
           +RWW+ PR PA+         +  L    + Y   V     +PN   NS+    QL K N
Sbjct: 43  KRWWSRPREPAQTTSKAGIHRKKVLLSVWWDYKGIVYFELLSPNRTINSVVYIEQLTKLN 102

Query: 572 RREYEKRVKACVEQSFI 622
               EKR +    +S +
Sbjct: 103 NAVEEKRPELTNRKSVV 119


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 518 PNPNSPANSMAAQLYKENRREYEKRVK 598
           P P + ANS A +LY +    Y + ++
Sbjct: 11  PFPGASANSEAKRLYDDLLSNYNRLIR 37


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 663 HPTVLPRKPAYTCIHWNESVNC 728
           HP +  R+   + +H  E+V+C
Sbjct: 167 HPWICQRERVASVVHRQETVDC 188


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 730 NFITCILVW 756
           N ITCI++W
Sbjct: 51  NIITCIVIW 59


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 388 NRTVGGLFGYSSVNSIVS 335
           NR +GG+ GY+ + +++S
Sbjct: 415 NRFLGGIGGYNGLPTVMS 432


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 569 SPCKAVRPSNLLESLGWDHL 510
           +P    +PS +++ LGW  L
Sbjct: 370 NPILKAKPSEVVQILGWKEL 389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,628
Number of Sequences: 438
Number of extensions: 5067
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)