Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30878
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 131 1e-31
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 100 2e-22
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 97 2e-21
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 89 5e-19
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 83 4e-17
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 82 7e-17
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 81 2e-16
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 73 4e-14
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 56 7e-09
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 55 9e-09
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 53 4e-08
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 52 9e-08
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 49 6e-07
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 48 2e-06
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 47 2e-06
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 46 7e-06
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 44 2e-05
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 42 9e-05
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 40 4e-04
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 36 0.008
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 31 0.17
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 28 1.2
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 27 2.1
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 27 2.1
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 27 2.8
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 27 3.7
SPAC5H10.09c |||3-methyl-2-oxobutanoatehydroxymethyltransferase|... 26 6.4
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 26 6.4
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 25 8.5
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 131 bits (316), Expect = 1e-31
Identities = 62/72 (86%), Positives = 68/72 (94%)
Frame = +3
Query: 249 QSVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQER 428
++VLIGDSGVGKS+LL RFTRNEFN+ESKSTIGVEFATR+I +D K IKAQIWDTAGQER
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 429 YRAITSAYYRGA 464
YRAITSAYYRGA
Sbjct: 72 YRAITSAYYRGA 83
Score = 116 bits (280), Expect = 3e-27
Identities = 53/74 (71%), Positives = 65/74 (87%)
Frame = +1
Query: 511 NVERWLRELRDHADQNILIMLVGNKSDLRHLRSIPTEEAKAFAEANGLSFIETSALDSTN 690
NV RWL+ELR+HAD NI+IMLVGNK+DL HLR++ TEEA+AFA N LSFIETSA+D++N
Sbjct: 100 NVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASN 159
Query: 691 VEPAFQNILTEIYR 732
VE AFQ +LTEI+R
Sbjct: 160 VEEAFQTVLTEIFR 173
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 100 bits (240), Expect = 2e-22
Identities = 46/73 (63%), Positives = 58/73 (79%)
Frame = +3
Query: 246 VQSVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQE 425
++ +LIGDSGVGKS LL RF+ + F +TIG++F R+IE+DGK IK QIWDTAGQE
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 426 RYRAITSAYYRGA 464
R+R IT+AYYRGA
Sbjct: 70 RFRTITTAYYRGA 82
Score = 59.3 bits (137), Expect = 6e-10
Identities = 26/72 (36%), Positives = 40/72 (55%)
Frame = +1
Query: 511 NVERWLRELRDHADQNILIMLVGNKSDLRHLRSIPTEEAKAFAEANGLSFIETSALDSTN 690
NV W + HA +N+ +L+GNK D R + E+ +A A+ G+ F+E SA + N
Sbjct: 99 NVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVN 158
Query: 691 VEPAFQNILTEI 726
V+ AF + EI
Sbjct: 159 VDEAFFTLAREI 170
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 97.5 bits (232), Expect = 2e-21
Identities = 45/70 (64%), Positives = 55/70 (78%)
Frame = +3
Query: 255 VLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQERYR 434
+LIGDSGVGKS LL RF + + STIGV+F R+ E++GKT+K QIWDTAGQER+R
Sbjct: 12 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFR 71
Query: 435 AITSAYYRGA 464
ITS+YYRGA
Sbjct: 72 TITSSYYRGA 81
Score = 63.7 bits (148), Expect = 3e-11
Identities = 31/72 (43%), Positives = 48/72 (66%)
Frame = +1
Query: 511 NVERWLRELRDHADQNILIMLVGNKSDLRHLRSIPTEEAKAFAEANGLSFIETSALDSTN 690
NV++WL+E+ +A + + +LVGNKSD+ + + AK FA++ + F+ETSA DSTN
Sbjct: 98 NVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTN 157
Query: 691 VEPAFQNILTEI 726
VE AF + +I
Sbjct: 158 VEQAFLTMSRQI 169
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 89.4 bits (212), Expect = 5e-19
Identities = 36/75 (48%), Positives = 58/75 (77%)
Frame = +3
Query: 240 LFVQSVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAG 419
+F++ V++GDSGVGK+ L+++F +F+ E K+TIG +F T+ + VD K + Q+WDTAG
Sbjct: 7 VFLKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAG 66
Query: 420 QERYRAITSAYYRGA 464
QER++++ A+YRGA
Sbjct: 67 QERFQSLGMAFYRGA 81
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 83.0 bits (196), Expect = 4e-17
Identities = 31/70 (44%), Positives = 55/70 (78%)
Frame = +3
Query: 255 VLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQERYR 434
+++G+SGVGK+S+++++ +F+ + K+TIG +F T+ + VD K + Q+WDTAGQER++
Sbjct: 12 IILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQERFQ 71
Query: 435 AITSAYYRGA 464
++ A+YRGA
Sbjct: 72 SLGVAFYRGA 81
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +1
Query: 568 MLVGNKSDLRHL-RSIPTEEAKAFAEANG-LSFIETSALDSTNVEPAFQNI 714
+L+GNK D+ R + +A AF +A G + + ETSA ++ NV+ AF+ +
Sbjct: 121 ILLGNKVDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETV 171
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 82.2 bits (194), Expect = 7e-17
Identities = 37/71 (52%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Frame = +3
Query: 255 VLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKT-IKAQIWDTAGQERY 431
VL+GDS VGKSSL+ RF +++F+ +STIG F T+++ +D T +K +IWDTAGQERY
Sbjct: 18 VLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQERY 77
Query: 432 RAITSAYYRGA 464
+++ YYR A
Sbjct: 78 KSLAPMYYRNA 88
Score = 52.8 bits (121), Expect = 5e-08
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +1
Query: 493 QAPVVQNVERWLRELRDHADQNILIMLVGNKSDL-RHLRSIPTEEAKAFAEANGLSFIET 669
QA ++ + W++EL+ A + I+I L GNK DL + R++ +A+A+A L F ET
Sbjct: 99 QAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQERRAVEKADAEAYAAEANLLFFET 158
Query: 670 SALDSTNVEPAFQNILTEI 726
SA + NV F I ++
Sbjct: 159 SAKTAENVNELFTAIAKKL 177
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 80.6 bits (190), Expect = 2e-16
Identities = 39/77 (50%), Positives = 53/77 (68%), Gaps = 4/77 (5%)
Frame = +3
Query: 246 VQSVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEV----DGKTIKAQIWDT 413
V+ VL G SG GKS LL RF +N+++ + T+G++FA+R I V K IK QIWDT
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDT 69
Query: 414 AGQERYRAITSAYYRGA 464
AGQE++R++ YYRGA
Sbjct: 70 AGQEKFRSVARNYYRGA 86
Score = 52.8 bits (121), Expect = 5e-08
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +1
Query: 508 QNVERWLRELRDHADQNILIMLVGNKSDLRHLRSIPTEEAKAFAEANGLSFI-ETSALDS 684
+ + WL ++R A I ++L G+KSDL++ R + TEEA F +S ETS+
Sbjct: 102 EELSSWLSDIRAMAPSTICVVLAGSKSDLQNQRQVSTEEAAEFCSEKHISSAHETSSYTG 161
Query: 685 TNVEPAFQNILTEI 726
+NVE F ++++ I
Sbjct: 162 SNVEECFLSVVSTI 175
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 72.9 bits (171), Expect = 4e-14
Identities = 27/68 (39%), Positives = 53/68 (77%)
Frame = +3
Query: 255 VLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQERYR 434
V +G+ VGK+SL++RF ++F+ ++TIG++F ++++ ++ +T++ Q+WDTAGQER+R
Sbjct: 15 VFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 74
Query: 435 AITSAYYR 458
++ +Y R
Sbjct: 75 SLIPSYIR 82
Score = 50.8 bits (116), Expect = 2e-07
Identities = 24/68 (35%), Positives = 40/68 (58%)
Frame = +1
Query: 511 NVERWLRELRDHADQNILIMLVGNKSDLRHLRSIPTEEAKAFAEANGLSFIETSALDSTN 690
N E+W+ ++R +++I+LVGNK+DL R + EE + A+ + +ETSA N
Sbjct: 101 NTEKWIEDVRAERGDDVIIVLVGNKTDLADKRQVTQEEGEKKAKELKIMHMETSAKAGHN 160
Query: 691 VEPAFQNI 714
V+ F+ I
Sbjct: 161 VKLLFRKI 168
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 55.6 bits (128), Expect = 7e-09
Identities = 28/70 (40%), Positives = 39/70 (55%)
Frame = +3
Query: 255 VLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQERYR 434
V++GD GK+SLLS FT F E T+ + + VDGK+++ +WDTAGQE Y
Sbjct: 12 VVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVS-DCRVDGKSVQLALWDTAGQEEYE 70
Query: 435 AITSAYYRGA 464
+ Y A
Sbjct: 71 RLRPMSYAKA 80
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 55.2 bits (127), Expect = 9e-09
Identities = 29/72 (40%), Positives = 42/72 (58%)
Frame = +3
Query: 240 LFVQSVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAG 419
++ + V++GD GK+SLL+ FT+ F + TI E I VDG +I+ +WDTAG
Sbjct: 12 IYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTI-FENYIHDIFVDGNSIELSLWDTAG 70
Query: 420 QERYRAITSAYY 455
QE Y + S Y
Sbjct: 71 QEEYDQLRSLSY 82
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 53.2 bits (122), Expect = 4e-08
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +3
Query: 258 LIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQERY 431
+IGDS +GK+SL+ + + F+ ES T+GV F ++I + I IWD GQ +
Sbjct: 15 MIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREF 72
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 52.0 bits (119), Expect = 9e-08
Identities = 24/67 (35%), Positives = 35/67 (52%)
Frame = +3
Query: 255 VLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQERYR 434
VL+GD G GK++ + R EF + +T+GVE + I +WDTAGQE+
Sbjct: 13 VLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEKLG 72
Query: 435 AITSAYY 455
+ YY
Sbjct: 73 GLRDGYY 79
Score = 32.3 bits (70), Expect = 0.074
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = +1
Query: 508 QNVERWLRELRDHADQNILIMLVGNKSDLRHLRSIPTEEAKAFAEANGLSFIETSALDST 687
+NV W R+L +NI I+L GNK D++ R + +A F L + + SA +
Sbjct: 98 KNVPHWWRDLV-RVCENIPIVLCGNKVDVKE-RKVKA-KAITFHRKKNLQYYDISAKSNY 154
Query: 688 NVEPAF 705
N E F
Sbjct: 155 NFEKPF 160
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 49.2 bits (112), Expect = 6e-07
Identities = 26/68 (38%), Positives = 38/68 (55%)
Frame = +3
Query: 255 VLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQERYR 434
V++GD GVGKS+L + ++ F E TI + + E+DG+ + DTAGQE Y
Sbjct: 12 VVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYR-KKCEIDGEGALLDVLDTAGQEEYS 70
Query: 435 AITSAYYR 458
A+ Y R
Sbjct: 71 AMREQYMR 78
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +1
Query: 565 IMLVGNKSDLRHLRSIPTEEAKAFAEANGLSFIETSALDSTNVEPAFQNILTEIYR 732
++LV NK DL R + E + A++ ++ETSA NVE AF +++ I R
Sbjct: 116 VVLVANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIRR 171
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 47.6 bits (108), Expect = 2e-06
Identities = 24/67 (35%), Positives = 36/67 (53%)
Frame = +3
Query: 255 VLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQERYR 434
V++GD GK+ LL F++ F T+ + +EVDG+ I+ +WDTAGQE Y
Sbjct: 10 VIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVA-DVEVDGRHIELALWDTAGQEDYD 68
Query: 435 AITSAYY 455
+ Y
Sbjct: 69 RLRPLSY 75
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 517 ERWLRELRDHADQNILIMLVGNKSDLRH 600
E+W+ E+ H N+ I+LVG K DLR+
Sbjct: 98 EKWISEVL-HFCSNLPILLVGCKVDLRN 124
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 47.2 bits (107), Expect = 2e-06
Identities = 23/67 (34%), Positives = 36/67 (53%)
Frame = +3
Query: 255 VLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQERYR 434
V++GD GK+ LL F++ F T+ + +EVDG+ ++ +WDTAGQE Y
Sbjct: 10 VIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVA-DVEVDGRHVELALWDTAGQEDYD 68
Query: 435 AITSAYY 455
+ Y
Sbjct: 69 RLRPLSY 75
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 45.6 bits (103), Expect = 7e-06
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +1
Query: 565 IMLVGNKSDLRHLRSIPTEEAKAFAEANGLSFIETSALDSTNVEPAFQNILTEI 726
I++VGNKSDL R++ EE KA A ++ E SA + NV AF+ I++EI
Sbjct: 114 IVVVGNKSDLHMQRAVTAEEGKALANEWKCAWTEASARHNENVARAFELIISEI 167
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/68 (33%), Positives = 36/68 (52%)
Frame = +3
Query: 258 LIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQERYRA 437
++G VGKSSL ++ N F TI F+ ++I+ G+ +I DTAGQ+ Y
Sbjct: 11 VLGSRSVGKSSLTVQYVENHFVESYYPTIENTFS-KNIKYKGQEFATEIIDTAGQDEYSI 69
Query: 438 ITSAYYRG 461
+ S + G
Sbjct: 70 LNSKHSIG 77
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 44.4 bits (100), Expect = 2e-05
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = +3
Query: 246 VQSVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQE 425
++ V++GD VGK+ LL +T N+F + T+ +A ++ + + ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAV-TVMIGDEPYTLGLFDTAGQE 62
Query: 426 RYRAITSAYY--RGAWARCWFTTSPST 500
Y + Y + C+ TSP++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVTSPAS 89
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 41.9 bits (94), Expect = 9e-05
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 255 VLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATR-SIEVDGKTIKAQIWDTAGQERY 431
V++GD G GK+ LL F+ F T+ + T + + K I+ +WDTAGQE Y
Sbjct: 18 VVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQEEY 77
Query: 432 RAITSAYY 455
+ Y
Sbjct: 78 DRLRPLSY 85
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 39.9 bits (89), Expect = 4e-04
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = +3
Query: 246 VQSVLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQE 425
V+ +L+G GK+++L + N E T G F R++EV+G ++ IWD GQ+
Sbjct: 17 VRVLLLGLDNAGKTTILKCLLNEDVN-EVSPTFG--FQIRTLEVEG--LRFTIWDIGGQK 71
Query: 426 RYRAITSAYYRGAWARCWFTTS 491
R Y+ A W S
Sbjct: 72 TLRNFWKNYFESTEAIIWVVDS 93
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 35.5 bits (78), Expect = 0.008
Identities = 19/69 (27%), Positives = 36/69 (52%)
Frame = +3
Query: 255 VLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQERYR 434
+++G GK+++L + N+ ++ + T+G T V K IK +WD GQ++ R
Sbjct: 25 LMLGLDAAGKTTILYKLKLNQ-SVVTIPTVGFNVET----VTYKNIKFNVWDVGGQDKIR 79
Query: 435 AITSAYYRG 461
+ Y+ G
Sbjct: 80 PLWRHYFTG 88
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 31.1 bits (67), Expect = 0.17
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +3
Query: 255 VLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAGQERYR 434
+++G GK+++L + E + + TIG T V+ + I +WD GQ++ R
Sbjct: 21 LMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYRNISFTVWDVGGQDKIR 75
Query: 435 AITSAYYR 458
+ Y++
Sbjct: 76 PLWRHYFQ 83
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 246 VQSVLIGDSGVGKSSLLSRFTRNE 317
V+ V+ GD GVGKSSL+S + +
Sbjct: 4 VRVVICGDQGVGKSSLISALIQED 27
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 258 LIGDSGVGKSSLLSRFTRNEFNLESKSTI--GVEF 356
++G GK++LLS F N N + +T+ VEF
Sbjct: 426 VVGSKSCGKTALLSSFINNNTNRLTPNTVVNSVEF 460
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 27.5 bits (58), Expect = 2.1
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +1
Query: 493 QAPVVQNVERWLRELRDHADQNILIMLVGNKSDLRHLRSIP---TEEAKAFAEANGLSFI 663
+AP+ N L D D+N+ V NK+ +L + T+ K+F NGL +
Sbjct: 249 EAPISTNYSFPSSSLEDQPDKNVQSSAVENKNKHTNLVTSSFNLTKPMKSFIRRNGLR-V 307
Query: 664 ETSALDSTN 690
+ S D T+
Sbjct: 308 QESVTDETD 316
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -2
Query: 352 STPMVDL--DSKLNSFLVKRDRRLLLPTPESPMS 257
ST M DL D +++ FL+ R++ +PT + P S
Sbjct: 219 STGMADLSKDDRISRFLILREQSKQIPTQQKPSS 252
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 255 VLIGDSGVGKSSLLSRFTRNEFNLESKSTIGVEFATRSIEVDG 383
V+ G SGVGKS+LL R ++ + S R+ E DG
Sbjct: 22 VVFGPSGVGKSTLLKRLLKDHGDKLGFSVSHTTRTPRAGEKDG 64
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -3
Query: 612 DGPKMPEIALVADQHDEDVLVGVVAQLAQPSLHVLYDRCLAM 487
DG K+P I + Q +VL G++A + +CL++
Sbjct: 77 DGDKIPSIPSLKGQPISNVLTGIIADSSSDQWKDKISKCLSL 118
>SPAC5H10.09c
|||3-methyl-2-
oxobutanoatehydroxymethyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 473 LLVYDIAKHLSYRTWSDGCASCAT 544
LL+ D+ +SY TW D C + AT
Sbjct: 82 LLMADLP-FMSYSTWEDACKNAAT 104
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 246 VQSVLIGDSGVGKSSLLSRFTR-NEFNLESKSTIGVEFATRSIEVDGKTIKAQIWDTAG 419
+ +++G+S +GK++ ++ F + N+ N K T+ ++ + I DT G
Sbjct: 119 INLIVVGESSLGKTTFVNSFLQSNDTNFRPKKTMDFVEHKATLSDGDQKFNLTIVDTPG 177
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 25.4 bits (53), Expect = 8.5
Identities = 7/24 (29%), Positives = 15/24 (62%)
Frame = +2
Query: 188 DYRAPDKPKWAQERMNMIICSKCT 259
D + ++P+WA + + IC +C+
Sbjct: 30 DCKRNEQPRWASWNLGVFICIRCS 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,972
Number of Sequences: 5004
Number of extensions: 54491
Number of successful extensions: 208
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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