Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30878
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.56 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.0  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   5.2  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   5.2  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   9.1  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   9.1  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -2

Query: 385 LPSTSILLVANSTPMVDLDSKLNSFLVKRDRRLLLPTPESPMSTL*TNNHI 233
           LPS    L  NS     L SKL +  VK+D+ ++L  P+    +L T  ++
Sbjct: 675 LPSLPSTLTKNSKQ--GLFSKLFAKKVKKDKDIILNVPKESTQSLTTTGNV 723


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 63  NHN*KVMLKEPCIVL*ICDICVQYY 137
           +H  KV+ K P I    C+I V+Y+
Sbjct: 128 HHTGKVVWKPPAIYKSFCEIDVEYF 152


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 499 PVVQNVERWLRELRDHADQNILIMLV 576
           P+++ +E W+  L +   +NIL MLV
Sbjct: 494 PLIELIEHWMPLLPNWILENILDMLV 519


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = +3

Query: 450 YYRGAWAR-CWFTTSPSTC 503
           YY   W + CW  T+P+ C
Sbjct: 485 YYPCCWWKICWTITTPAIC 503


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = +3

Query: 450 YYRGAWAR-CWFTTSPSTC 503
           YY   W + CW  T+P+ C
Sbjct: 538 YYPCCWWKICWTITTPAIC 556


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 118 IFVSNIIFIYGHLDVSKLTD 177
           IF+  IIFIY +  ++++TD
Sbjct: 13  IFLILIIFIYSNETIAQVTD 32


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 118 IFVSNIIFIYGHLDVSKLTD 177
           IF+  IIFIY +  ++++TD
Sbjct: 13  IFLILIIFIYSNETIAQVTD 32


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -3

Query: 567 DEDVLVGVVAQLAQPSLHVLYDRCLAMS 484
           DED+++G++    Q     +  +CL  S
Sbjct: 91  DEDIMLGLLPDQLQERAQSVMGKCLPTS 118


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -3

Query: 567 DEDVLVGVVAQLAQPSLHVLYDRCLAMS 484
           DED+++G++    Q     +  +CL  S
Sbjct: 91  DEDIMLGLLPDQLQERAQSVMGKCLPTS 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,300
Number of Sequences: 438
Number of extensions: 3737
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)