Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30877
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    60   3e-10
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   5.1  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    26   6.7  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    26   6.7  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    26   6.7  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    25   8.9  

>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 60.5 bits (140), Expect = 3e-10
 Identities = 26/56 (46%), Positives = 40/56 (71%)
 Frame = +3

Query: 510 SELSRLAVNSVTRGDYERPLRISKFVMELNAGFRLLNLKNDHLRKRFDALKYDVKK 677
           SEL+R +VNSV  G+Y  P      + ++++ F++L+LKND LR+ FD LKYD+K+
Sbjct: 167 SELARQSVNSVISGNYHIPFEALNTIQKVHSSFQVLSLKNDSLRRHFDGLKYDLKR 222



 Score = 34.7 bits (76), Expect = 0.014
 Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
 Frame = +1

Query: 274 GYARLKDAVPPTDYFKYQDHWRFMTQRYCYLIALTIW---LEKGI-----LASHETMAXI 429
           G A L    P   Y+KY   W    Q+  YL  L  W   L+K +     L S   +  I
Sbjct: 83  GLAELASNFP---YYKYNGVWDRSIQKVVYLYLLASWTGRLDKSLRPTYSLLSLSEVGQI 139

Query: 430 LGVSPVELKEGFHLDIEDYLIGLLTM 507
           L V     +  FHL IE YL  +L++
Sbjct: 140 LQVPVFPEESTFHLSIEQYLHAVLSL 165


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 111 STKNKNYARRFGLYVKRLTKFLGK 182
           STK    A  +G YV++LTK + K
Sbjct: 699 STKTSKAASAYGAYVEQLTKLMDK 722


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = +2

Query: 47  KHVKMCDNELINKIFSDFQKNLDQEQEL----RETIRTICQEVDQ 169
           K+  +C NE  NK++    K+++ ++++    +  I+ IC ++ Q
Sbjct: 261 KYKWLCINEKCNKLYGRHSKSINPQKQVCRLCKSQIKQICPKIKQ 305


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 44  IKHVKMCDNELINKIFSDFQKNLDQEQELRETIRTICQEVDQISRE 181
           +K       ELI +  S FQK L +E+E    I    QE++ + R+
Sbjct: 703 LKDATASQKELIVQT-SSFQKELVEERERHNAISKRLQEIESLYRD 747


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -2

Query: 324 ILEVIGWWYSIFQSCVSIVGLLESRRALPHAGEMPASL*CMTWSTVVASREIW 166
           I E+   ++S+    +   G    RR +P   E PA   C++W+ V  +  +W
Sbjct: 104 IQELFSVFFSMLNFMIHYNGYHIMRRCIPD--EHPAKRLCLSWAIVGMNAWVW 154


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 268 GPSRK*TSFATCRRNAGVIVVYD 200
           GPSR    FAT R+NA  I+  D
Sbjct: 373 GPSRVRDLFATARKNAPCIIFID 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,551
Number of Sequences: 5004
Number of extensions: 56364
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)