Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30877
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0176 + 15432092-15432470,15432592-15432688,15432801-154329...    68   7e-12
11_06_0051 - 19645726-19646007,19646045-19646513,19647749-196477...    29   5.3  
03_03_0168 - 15047383-15047847,15048085-15048192,15048313-150484...    29   5.3  
01_01_1136 + 9012069-9012317,9013547-9013722,9014342-9014425,901...    28   7.0  

>10_08_0176 +
           15432092-15432470,15432592-15432688,15432801-15432985,
           15433012-15433056,15433447-15433472,15435299-15435434,
           15435608-15435702
          Length = 320

 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 27/56 (48%), Positives = 42/56 (75%)
 Frame = +3

Query: 510 SELSRLAVNSVTRGDYERPLRISKFVMELNAGFRLLNLKNDHLRKRFDALKYDVKK 677
           ++  R  VN VT GDY+ P ++  F+ +L+A FR+LNL+ND LRK+FD +KYD+++
Sbjct: 242 NDFPRYVVNRVTAGDYDCPRKVLSFLTDLHASFRMLNLRNDFLRKKFDGMKYDLRR 297



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 21/101 (20%)
 Frame = +1

Query: 277 YARLKDAVP--PTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILASHETMAXILGVSP-- 444
           Y+RL + +   P  Y++Y   WR  TQ    ++A   WLE G L  H      LG  P  
Sbjct: 143 YSRLAEILKECPGQYYRYHGDWRSETQAVVSMLAFMHWLETGGLLMHAEAQEKLGCMPGP 202

Query: 445 --------------VELKEG---FHLDIEDYLIGLLTMSQN 516
                         ++LK     F LD+EDYL GL  MS +
Sbjct: 203 CDGGVVHIDCVLCVMKLKVSSGEFGLDVEDYLTGLCFMSND 243



 Score = 37.9 bits (84), Expect = 0.009
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +2

Query: 89  FSDFQKNLDQEQELRETIRTICQEVDQISREATTVLQVIHYNDAGISPACGKAR 250
           F  F+  LD+   LR+ IR +  EV+  SR A+  L ++H     ++   GKA+
Sbjct: 81  FESFRAQLDESSTLRDRIRAVVSEVESASRVASAALLLVH-QPVPLADVLGKAK 133



 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 671 KEIEEVVYDLSIRGLLP 721
           + +EEV YD+ IRGL+P
Sbjct: 296 RRVEEVYYDVKIRGLVP 312


>11_06_0051 -
           19645726-19646007,19646045-19646513,19647749-19647771,
           19647978-19648328
          Length = 374

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 35  RLLIKHVKMCDNELINKIFSDFQKNLDQEQELRETIRTICQEVDQISREATTVL 196
           +L +   K   NE IN+I   F +   +E+E     R I +E+    +  TTV+
Sbjct: 196 KLELMEAKRRQNEKINRILEKFNEMEKRERESMHRRRDIMEELSTSIKVTTTVI 249


>03_03_0168 -
           15047383-15047847,15048085-15048192,15048313-15048464,
           15048555-15048752,15049553-15050856,15051281-15051354,
           15051458-15051492,15052853-15053015
          Length = 832

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
 Frame = +2

Query: 17  NKIKESRLLIKHVKMCDNELINKIFSDFQKNLDQEQELR--ETIR-----TICQEVDQIS 175
           +++++ RL +K +K   +EL+ ++F   Q   ++E+E +  ET+          E+  +S
Sbjct: 103 DELRKRRLPVKGLK---DELVRRLFESIQSEKEEEEEEQDNETVEVNPAANQASEIQSVS 159

Query: 176 REATTVLQVIH 208
           +E T  +  +H
Sbjct: 160 QETTVSITEVH 170


>01_01_1136 +
           9012069-9012317,9013547-9013722,9014342-9014425,
           9014757-9014826,9015644-9015652
          Length = 195

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 724 PWQQPPDAEIVDHFLYFFTSY 662
           PW+ PPDAE VD   Y    Y
Sbjct: 23  PWRAPPDAEAVDALPYIDGDY 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,890,054
Number of Sequences: 37544
Number of extensions: 376014
Number of successful extensions: 1055
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)