Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30877
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_1656| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)         28   7.2  
SB_34856| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_31469| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1107

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 267 PRWIRKTERCCTTNRLLQVSGSLEIHDPTLLLSDSAHHMARE 392
           P W  ++E    T  +  V GS++   P LLL  +  H+ RE
Sbjct: 416 PMWFSESEDSTVTEIVESVGGSVDATQPKLLLRQT-QHLVRE 456


>SB_1656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 712 PPDAEIVDHFLYFFTSYFRASKRLRK*SFFK 620
           PP  ++  H + F    FR S RLRK  FFK
Sbjct: 43  PPGLDLSYHVIVFERLRFRPSPRLRKGIFFK 73


>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
          Length = 1769

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/48 (22%), Positives = 27/48 (56%)
 Frame = +2

Query: 44   IKHVKMCDNELINKIFSDFQKNLDQEQELRETIRTICQEVDQISREAT 187
            I  ++  D+E++  +  D +K LD+  E+R  +  I  +++++  + T
Sbjct: 1279 IATLRALDDEILKLLVEDLEKFLDEVDEMRGKLHKIVFKIEELLSQKT 1326


>SB_34856| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 119 EQELRETIRTICQEVDQISREATTVLQVIH 208
           EQ LRE +   C+E   ++ EA  +L+  H
Sbjct: 60  EQRLRERLGIACEETKHVNDEAILILEQAH 89


>SB_31469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 119 EQELRETIRTICQEVDQISREATTVLQVIH 208
           EQ LRE +   C+E   ++ EA  +L+  H
Sbjct: 60  EQRLRERLGIACEETKHVNDEAILILEQAH 89


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 80   NKIFSDFQKNLDQEQELRETIRTICQEVDQISRE 181
            N    +   N ++ Q+LRE    IC+E +Q+ RE
Sbjct: 1299 NTSLEEKDNNEEEVQQLREWYDVICKEKEQLERE 1332


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,637,705
Number of Sequences: 59808
Number of extensions: 423846
Number of successful extensions: 1120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)