Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30877
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58749-3|AAK18875.1|  202|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z82272-3|CAB05215.1|  340|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>U58749-3|AAK18875.1|  202|Caenorhabditis elegans Hypothetical
           protein B0496.4 protein.
          Length = 202

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
 Frame = +2

Query: 74  LINKIFSDFQKNLDQEQELRETIRTICQE-VDQISREATTVLQVI--HYNDAGISPACGK 244
           L+NK  +  ++NLD+ ++ RE+ R   QE + + +RE +  +  +   Y +   S    K
Sbjct: 116 LMNKYLNKSKENLDEGRKSRESSR--AQELLARTNREMSPTIDSLMKRYGNNNSSAHRIK 173

Query: 245 ARLLSRRPTMDTQD 286
              +SRR +M+ QD
Sbjct: 174 DSTVSRRESMEIQD 187


>Z82272-3|CAB05215.1|  340|Caenorhabditis elegans Hypothetical
           protein F55G11.6 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -3

Query: 560 LVVAAGHRVHGQTRQF*DIVNSPIR*SSMSKWKPSFNSTGLTPNXSAMVSC 408
           LVVAA     G   +  +++N P+   +   W PS+  T   P      SC
Sbjct: 9   LVVAAAVSAAGSGCKIGNVINKPVIDGTPVYWPPSWTETQPAPQLDKEQSC 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,973,360
Number of Sequences: 27780
Number of extensions: 313454
Number of successful extensions: 948
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)