Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30877
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37020.1 68415.m04540 translin family protein similar to SP|Q...    71   1e-12
At4g03550.1 68417.m00486 glycosyl transferase family 48 protein ...    29   2.5  
At5g38350.1 68418.m04628 disease resistance protein (NBS-LRR cla...    29   3.4  
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein...    29   3.4  
At5g63370.1 68418.m07954 protein kinase family protein contains ...    28   5.9  
At4g31230.1 68417.m04433 protein kinase family protein contains ...    28   7.7  
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    28   7.7  

>At2g37020.1 68415.m04540 translin family protein similar to
           SP|Q62348 Translin {Mus musculus}; contains Pfam profile
           PF01997: Translin family
          Length = 238

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 28/56 (50%), Positives = 44/56 (78%)
 Frame = +3

Query: 510 SELSRLAVNSVTRGDYERPLRISKFVMELNAGFRLLNLKNDHLRKRFDALKYDVKK 677
           ++L R  VN VT GDY+ P ++  F+ +L+A FR+LNL+ND LRK+FD++KYD+++
Sbjct: 154 NDLPRYVVNRVTAGDYDCPRKVMNFLTDLHAAFRMLNLRNDFLRKKFDSMKYDLRR 209



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = +1

Query: 277 YARLKDAVP--PTDYFKYQDHWRFMTQRYCYLIALTIWLEKGILASHETMAXILGVSPVE 450
           Y RL + +   P  Y++Y   WR  TQ     +A   WLE G L  H      LG++ +E
Sbjct: 78  YGRLAEILEECPGQYYRYHGDWRSETQAVVSQLAFMHWLETGTLLVHTEAEEKLGLNSLE 137

Query: 451 LKEGFHLDIEDYLIGLLTMSQN 516
               F L+ EDYL G+  MS +
Sbjct: 138 ----FGLETEDYLTGICFMSND 155



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 77  INKIFSDFQKNLDQEQELRETIRTICQEVDQISREATTVLQVIH 208
           + K F  F+  L++   LRE IR +  E++  +R     L ++H
Sbjct: 12  LEKQFESFRVQLEESAALREQIRAVVMEIESATRLIQANLLLVH 55


>At4g03550.1 68417.m00486 glycosyl transferase family 48 protein
           contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1780

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -2

Query: 381 YGERYQITVALGHESPVILILEVIGWWYSIFQSCV-SIVGLLESRRALPHAGEM 223
           YG+  + +VAL     V++ L  I  WY+I+ S V ++VGL +    +   G++
Sbjct: 534 YGDSNRFSVALLWLPVVLIYLMDIQIWYAIYSSIVGAVVGLFDHLGEIRDMGQL 587


>At5g38350.1 68418.m04628 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 833

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 430 LGVSPVELKEGFHLDIEDYLIGLLTMSQNC 519
           L +S +++++GFHL  E  LI L  +S NC
Sbjct: 296 LALSFLDVRQGFHLLAEKSLINLKFLSTNC 325


>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 282

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 47  KHVKMCDNELINKIFSDFQKNLDQEQELRETIRTICQEVDQISREATTV 193
           K VK C NEL  ++ S    N   E++   T+ +  Q++DQ S +   +
Sbjct: 142 KRVKNCINELRERVASGVDPNKLYEKQEENTVPSDDQDMDQPSHDEENI 190


>At5g63370.1 68418.m07954 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 612

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +2

Query: 503 RCLRIVSSGRELCDPRRLRAPPE-DLQVRDGTERRLQAIELEERSFAQTLRRPKV*RKEI 679
           R + +  SGR+  + R+++ P + DL+  DG  R   A E  E      ++RP   R++ 
Sbjct: 27  RDVYVRQSGRD-DERRQIKRPSDHDLRRNDGRHRSRLAYEKGELREEAEVQRPSEKRRKF 85

Query: 680 EEVVYDLSIRGLLPRAMRT 736
             +V++    G  P   +T
Sbjct: 86  SPIVWNAEKVGRAPSREKT 104


>At4g31230.1 68417.m04433 protein kinase family protein contains
           Pfam profiles PF00069: Protein kinase domain, PF00582:
           universal stress protein family
          Length = 764

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 483 LSDWTIDDVSELSRLAVNSVTRGDYERPLRISKFVM-ELN 599
           +SDW ++D +E ++LA+        +RP  +SK ++ ELN
Sbjct: 693 VSDWPVEDTTEFAKLALKCAEIRRKDRP-DLSKVILPELN 731


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 228 LRHV--AKLVYFREGPRWIRKTERCCTTNRLLQVSGSLEIHDPTLLLSDSAHHMAREGN 398
           LRHV  +++   ++ P+W +     C  NRL+ +  SL++      L  S +  A+  N
Sbjct: 150 LRHVFASRIAEIKDSPQWNKLAFISCACNRLVLMDESLQLLPAVESLDLSRNKFAKVDN 208


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,150,711
Number of Sequences: 28952
Number of extensions: 298286
Number of successful extensions: 885
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)