Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30876
         (762 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   2.0  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.7  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    21   8.1  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 185 LAFNIDSMHCDKSGSTTAC 241
           LAF+ID   CD  G    C
Sbjct: 71  LAFDIDKQTCDWKGKVNNC 89


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 722 FGDRTNYRLYNRRLCPDARLKR 657
           +G+     +Y RR C + RLK+
Sbjct: 226 YGNNCEIDMYMRRKCQECRLKK 247


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 96  YHSIVLNNVKILALHTVIRVARFIVYPVFNWRSILIVCIAISPGRRPLAD 245
           Y S  L N+K+L    + +   +++  V N   +L +C A+   R+   D
Sbjct: 79  YWSEFLANLKLLKGRKIRKNLYYLLLFVINVLYVLTLCYAVYYWRQQYED 128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,708
Number of Sequences: 336
Number of extensions: 2915
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)