Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30876
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0085 + 14725531-14726622                                         29   5.3  
05_07_0003 + 26981956-26982190,26982258-26982318,26982739-269828...    28   9.3  

>10_08_0085 + 14725531-14726622
          Length = 363

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 444 LVCLFKYRYYLYVITVYNSLNISFTYVCDSSVICLFSFAGS 566
           L+C  K   Y+ V TV N L ++  + CD      FSF GS
Sbjct: 285 LICEEKLCKYIGVCTVSNILALADQHHCDGLKKACFSFLGS 325


>05_07_0003 +
           26981956-26982190,26982258-26982318,26982739-26982833,
           26983304-26983479,26983738-26983959,26984041-26984279,
           26984786-26985311,26985407-26985680,26985759-26986410,
           26986508-26986736,26986841-26987107,26987180-26987443,
           26987526-26988194
          Length = 1302

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +3

Query: 90  TNYHSIVLNNVKILALHTVIRVARFIVYPVFNWRSILIVCIAISPG 227
           +N   +V +++ ++   +V  +A FI+  V NWR  L+  + +  G
Sbjct: 839 SNIRRLVGDSLALIVRSSVTIIAGFIIAMVANWRLALVATVVLPLG 884


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,950,005
Number of Sequences: 37544
Number of extensions: 279097
Number of successful extensions: 517
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)