Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30876
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81528-8|CAB04288.2|  643|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily a...    29   4.8  

>Z81528-8|CAB04288.2|  643|Caenorhabditis elegans Hypothetical
           protein F35E2.9 protein.
          Length = 643

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 435 HFFLVCLFKYRYYLYVITVYNSLNISFTYVCDSSVICLF 551
           H F   +   R+ L+ + + NS N   TY CD S   LF
Sbjct: 344 HIFSATMISSRHLLFPVELNNSRNNQPTYQCDDSKRHLF 382


>AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 123 protein.
          Length = 655

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = -2

Query: 248 RICKRSSTRTYRNAYYQY*TPVKYRINNKS----CDTDYCV*CEYFNV-IQHDRMIISEK 84
           R+ +R+ T  Y++ +     PV +   N      C T + V C       QHD  ++++K
Sbjct: 126 RLLQRAMTLNYQHHWIVDNMPVTFCFKNLQNMDVCTTGFPVGCFVDEQGYQHDACVLNQK 185

Query: 83  YKALNN 66
           YK  NN
Sbjct: 186 YKTPNN 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,605,123
Number of Sequences: 27780
Number of extensions: 274550
Number of successful extensions: 673
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)