Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30876
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    23   3.1  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    23   3.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.1  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    23   3.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   4.1  

>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 623 VTKDCFAATLTIV*AVRQDT 682
           VT  C  A LT+V  + QDT
Sbjct: 5   VTVTCLLAALTVVRGIDQDT 24


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 623 VTKDCFAATLTIV*AVRQDT 682
           VT  C  A LT+V  + QDT
Sbjct: 5   VTVTCLLAALTVVRGIDQDT 24


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 722 FGDRTNYRLYNRRLCPDARLKR 657
           +G+     +Y RR C + RLK+
Sbjct: 225 YGNNCEIDMYMRRKCQECRLKK 246


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 722 FGDRTNYRLYNRRLCPDARLKR 657
           +G+     +Y RR C + RLK+
Sbjct: 22  YGNNCEIDMYMRRKCQECRLKK 43


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 448 TKKKCNALQVIREIISIYSSDLDSGRVHTFESV 350
           T +KC+      ++I   S+ LD+ +VH  +S+
Sbjct: 250 TIRKCDESSPHDQVIIGGSNGLDTSKVHIIDSI 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,250
Number of Sequences: 438
Number of extensions: 4268
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)