Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30875X
         (352 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   0.39 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   2.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   2.8  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    21   3.7  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   3.7  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      20   6.4  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    20   8.5  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    20   8.5  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.2 bits (50), Expect = 0.39
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 144  TTNSLTFLLRTHNS 185
            TTNSLTF L+ H S
Sbjct: 1408 TTNSLTFKLKPHES 1421


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 92  YSAHASLLSVGGVYIXIYNEQPDFPIENPQQFILD 196
           + AH  L  + G+Y  +   QP  P ++P   + D
Sbjct: 243 WHAHTGLQKMDGLYGSVVIRQP--PAKDPNSHLYD 275


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 92  YSAHASLLSVGGVYIXIYNEQPDFPIENPQQFILD 196
           + AH  L  + G+Y  +   QP  P ++P   + D
Sbjct: 243 WHAHTGLQKMDGLYGSVVIRQP--PAKDPNSHLYD 275


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 304 GVEINCIGQFGLIF 345
           G +I+ IGQFG+ F
Sbjct: 118 GADISMIGQFGVGF 131


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 6/19 (31%), Positives = 10/19 (52%)
 Frame = -1

Query: 214 PNEFQQIQYELLWVLNRKV 158
           PNE    +Y L+W+    +
Sbjct: 186 PNEDYSCEYNLVWIKEESI 204


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -2

Query: 282 SESCQSMRYGSTRSMVMSPLTSS--RTNFS 199
           SES Q+ +YG   S   + LTS+  R N S
Sbjct: 99  SESSQAAKYGGCFSGESTVLTSTGLRRNLS 128


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 19.8 bits (39), Expect = 8.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 312 FYAWIFNNDISE 277
           F  W FNN IS+
Sbjct: 417 FKLWNFNNQISD 428


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 19.8 bits (39), Expect = 8.5
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 282 SESCQSMRYGSTRSMVMSPLTSSRTNFSRSNMNCCGFS 169
           SE+    R+  T SMV S   +S    + S  NC   S
Sbjct: 39  SEAGDEDRFSFTSSMVQSLDGNSSDLENSSEENCVSMS 76


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,142
Number of Sequences: 336
Number of extensions: 1523
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6981810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)