Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30875X
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    25   2.6  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    25   3.4  
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    25   4.5  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   4.5  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    24   6.0  
SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa...    24   6.0  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    24   7.9  

>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 309 YAWIFNNDISESCQSMRYGSTRSMVMSPLTSSRTNFS 199
           Y W+FNN  +ES       ST+S+ +S L   R+N S
Sbjct: 535 YLWLFNNAPNESPV-----STQSVPISSLNGQRSNSS 566


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 238 GHVAFNFFPNEFQQIQYELLWVLNRKVRLFVVYVNVYS 125
           GHV+FNF  +  Q   +   ++L+     F+VY + Y+
Sbjct: 205 GHVSFNFVNSLKQTFIFMQPYLLSHMFPQFLVYFSEYT 242


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 161 SQAVRCICXCILHRPTEGSRVPS 93
           S A R I   I+ RPT+G  VP+
Sbjct: 173 SHAARLIMTLIIARPTDGVMVPA 195


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 174 FSIGKSGCSLYMXMYTPPTDRRLACAEYVKG 82
           + +   G   Y+  Y+PP+  +L    YVKG
Sbjct: 187 YKLALEGKCNYVIRYSPPSSSKLNSKLYVKG 217


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 108 LACAEYVKGAISGPSSX*LALVFCSTSCNSARV 10
           L C+ YV+G+++ P S    LVF  T   +  V
Sbjct: 11  LLCSLYVRGSLADPESEQEPLVFNPTEVKAPLV 43


>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 162 KSGCSLYMXMYTPPTDRRLACAEYV 88
           + G SL+  +Y    +RRL C  Y+
Sbjct: 60  QQGLSLFCSIYKDSPERRLECLYYI 84


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/36 (27%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 92  YSAH--ASLLSVGGVYIXIYNEQPDFPIENPQQFIL 193
           Y++H   SLL++ G++  + +   D+P+  P+ + L
Sbjct: 276 YNSHHAVSLLALNGLFTLMISHNLDYPLFYPKLYAL 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,368,181
Number of Sequences: 5004
Number of extensions: 25064
Number of successful extensions: 76
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)