Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30875X
(352 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428... 55 2e-08
02_01_0589 - 4355207-4355410,4355574-4355747,4356234-4356344,435... 29 1.0
04_03_0923 + 20843477-20845044,20846081-20846996 29 1.4
02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338... 28 2.4
08_02_0490 - 17724878-17725045,17725264-17725342,17725434-177254... 27 4.1
03_02_0608 - 9818020-9818192,9818723-9818906,9818991-9819323,981... 27 5.5
05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819... 26 9.6
03_02_0582 + 9624481-9626844 26 9.6
03_02_0171 + 6126685-6127107,6127237-6127581,6127701-6127997,612... 26 9.6
02_04_0273 + 21454795-21454925,21454962-21455193 26 9.6
>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
22343193-22343317,22343815-22344276,22344357-22344700,
22345061-22345406,22345492-22345941,22346760-22347051,
22347171-22347515,22347611-22347834,22348072-22348563,
22348664-22349056,22349601-22349741,22349845-22350207,
22350494-22352683,22353298-22353360,22353434-22353535,
22353672-22354027,22354326-22354413,22354517-22354750,
22355508-22355975
Length = 2632
Score = 54.8 bits (126), Expect = 2e-08
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Frame = +2
Query: 2 DNSTRAELQDVLQNTKANYXEEGPLIAP----FTYSAHASLLSVGGVYIXIYNEQPDFPI 169
++STR EL + +A+ +G FTY A + L+VG VY+ +YN QPD+ I
Sbjct: 1921 NSSTRGELLKFVDQQRASQGPDGSYDLTESHCFTYQALSKELNVGNVYLRVYNNQPDYEI 1980
Query: 170 ENPQQFILDLLKFVREEVK 226
+ + F + LLKF+ E V+
Sbjct: 1981 SDQEGFCIALLKFIAELVQ 1999
Score = 35.9 bits (79), Expect = 0.009
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +2
Query: 119 VGGVYIXIYNEQPDFPIENPQQFILDLL 202
VGG+Y+ ++ + P FP+ NP++F+ LL
Sbjct: 2298 VGGIYVRLFLKDPKFPLRNPKRFLEGLL 2325
>02_01_0589 -
4355207-4355410,4355574-4355747,4356234-4356344,
4356506-4356712,4357609-4357716,4358442-4358698,
4359120-4359241,4359782-4360001,4360877-4361130,
4361782-4362015,4362143-4362189
Length = 645
Score = 29.1 bits (62), Expect = 1.0
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3
Query: 74 AAPPLXSWPWCS 39
AAPPL SWPW S
Sbjct: 2 AAPPLSSWPWAS 13
>04_03_0923 + 20843477-20845044,20846081-20846996
Length = 827
Score = 28.7 bits (61), Expect = 1.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 195 SNMNCCGFSIGKSGCSLY 142
SN +C +S GKSGCS++
Sbjct: 388 SNCSCTAYSYGKSGCSVW 405
>02_05_0336 + 28033315-28033365,28033580-28033585,28033798-28033884,
28034741-28034830,28035736-28037778,28037916-28038062,
28038148-28038560,28038656-28038755
Length = 978
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -2
Query: 300 IFNNDISESCQSMRYGSTRSM---VMSPLTSSRTNFSRSNMNCCGFSIGKSGCSLYMXMY 130
+F ++ +S + + ++R + P +S N+S ++ NC S G + C+
Sbjct: 850 VFTSEFQQSKSNRDHHNSRQVDRECTQPSIASMANYSVTHQNCRRTSNGSTRCTEGTDAT 909
Query: 129 TPPTD 115
T PTD
Sbjct: 910 TAPTD 914
>08_02_0490 -
17724878-17725045,17725264-17725342,17725434-17725498,
17725569-17725657,17725750-17725858,17725969-17726047,
17727247-17727512
Length = 284
Score = 27.1 bits (57), Expect = 4.1
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -2
Query: 252 STRSMVMSPLTSSRTNFSRSNMNCCGFSIGKSGCSLYMXMYTPPTDRRLACAEYVKG 82
S S+ + L + +F S +NCCG + G +Y YT P +R + ++ G
Sbjct: 89 SMLSVGLISLVEASKDFMES-VNCCGLKVNSWGNVVY-DEYTRPVERIVDYRTHISG 143
>03_02_0608 -
9818020-9818192,9818723-9818906,9818991-9819323,
9819455-9819592,9819707-9819836,9820151-9820266
Length = 357
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 92 YSAHASLLSVGGVYIXIYNEQPDFP 166
YSA + SVG +++ + N QP FP
Sbjct: 202 YSAAIDVWSVGCIFMELINRQPLFP 226
>05_05_0127 -
22580720-22580808,22580936-22580987,22581703-22581908,
22582019-22582152,22582239-22582369,22583333-22583392,
22583615-22583755,22583880-22584347,22584524-22584686,
22585373-22585476,22585755-22585853,22586177-22586281,
22586516-22586596,22587168-22587986,22588497-22588553
Length = 902
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 243 SMVMSPLTSSRTNFSRSNMNCCGFSIGKSGC 151
S+ M L S N++ N+NCC K+ C
Sbjct: 351 SVSMRSLPFSLHNYATRNLNCCKDEAQKAAC 381
>03_02_0582 + 9624481-9626844
Length = 787
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 170 ENPQQFILDLLKFVREEVKG 229
ENP +F LDL+K + E +G
Sbjct: 384 ENPTEFALDLIKEMETETEG 403
>03_02_0171 +
6126685-6127107,6127237-6127581,6127701-6127997,
6129763-6129990,6130716-6131036
Length = 537
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 294 NNDISESCQSMRYGSTRSMVMSPLTSSRTNFSRSNMN 184
NN+ ++ CQS + GS S P SS+ ++S + N
Sbjct: 290 NNNAADDCQSRKCGSRHS--RKPSASSQRSWSGGSTN 324
>02_04_0273 + 21454795-21454925,21454962-21455193
Length = 120
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +1
Query: 4 QQHASRITRRAAEHQGQLXRGGAADSSLHVLGTREPSVGRW 126
QQ S + R + +G AA +S + R+P G W
Sbjct: 57 QQRGSSMAARISAAEGGAGGAAAAAASKEIFWMRDPKTGCW 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,081,944
Number of Sequences: 37544
Number of extensions: 168073
Number of successful extensions: 464
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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