Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30875X
(352 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 8e-04
SB_9481| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.35
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_9147| Best HMM Match : Sushi (HMM E-Value=0) 27 4.3
SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27) 27 5.7
SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.7
SB_177| Best HMM Match : SBP_bac_3 (HMM E-Value=0.032) 27 5.7
SB_29907| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.5
SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.5
SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004) 26 7.5
SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 26 9.9
SB_407| Best HMM Match : DnaJ (HMM E-Value=0.0039) 26 9.9
>SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1702
Score = 39.5 bits (88), Expect = 8e-04
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +2
Query: 86 FTYSAHASLLSVGGVYIXIYNEQPDFPIE 172
FT++ H L VG +++ +YNEQP FP+E
Sbjct: 1674 FTFTVHQKELIVGEIFVRVYNEQPAFPLE 1702
>SB_9481| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 30.7 bits (66), Expect = 0.35
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 19 RITRRAAEHQGQLXRGGAADSSLHVLGTREPSVGR 123
RI+R A H+ Q GGA DS L ++ P V R
Sbjct: 147 RISRDCARHRAQTAGGGAIDSQLSIMLMDTPQVQR 181
>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2408
Score = 27.5 bits (58), Expect = 3.2
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = -2
Query: 300 IFNNDISESCQSMRYGSTRSMVMSPLTSSRTNFSR 196
+F++ I+E CQ + G ++ +P +++ F+R
Sbjct: 2013 VFDDTITEMCQELEEGVVNLLIHTPNSTAEVGFNR 2047
>SB_9147| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1656
Score = 27.1 bits (57), Expect = 4.3
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 92 YSAHASLLSVGGVYIXIYNEQPDFPIENPQQFILDL 199
Y H + +S V + +P+FP PQ+F D+
Sbjct: 1539 YHGHVTHISTDTVRVMPSEHEPNFPKNKPQEFNRDI 1574
>SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27)
Length = 2056
Score = 26.6 bits (56), Expect = 5.7
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = -2
Query: 273 CQSMRYGSTRSMVMSPLTSSRTNFSRSNMNCCGFSIGKSG-CSLYMXMYTP--PTDRR 109
CQ ++ + S + S R N R ++NC ++ ++G C +++ + TP P+D+R
Sbjct: 1456 CQGVKVCDSPSCTYTVSKSQRRNRCRDHVNC---NLRETGPCPVHIVIVTPKDPSDKR 1510
>SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 300 IFNNDISESCQSMRYGSTRSMVMSPLTSSRTN 205
+F NDI + C SM + +++ ++ P+T R +
Sbjct: 345 VFINDIVDQCSSMEFNASKCQLL-PITLKRNS 375
>SB_177| Best HMM Match : SBP_bac_3 (HMM E-Value=0.032)
Length = 619
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 102 TRAFCRSVEYTXTYTTNSLTFLLRTHNSS 188
T+ R V++T Y NSLTFL++ S
Sbjct: 407 TQERLRYVDFTTPYAGNSLTFLVKKQRKS 435
>SB_29907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 99 HTRAFCRSVEYTXTYTTNSLTFLLRTHNSSY 191
+TR + ++ YT YT NS T N+SY
Sbjct: 97 YTREYKLNIRYTREYTLNSWYTRKHTPNTSY 127
>SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1798
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -1
Query: 187 ELLWVLNRKVRLFVVYVNVYSTDRQKARVCRVREGSYQ 74
++++ +R++VVY+ +YS + VC +R SY+
Sbjct: 1358 DIMYHKRHNIRIWVVYITLYSVENS---VCVLRNLSYR 1392
>SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004)
Length = 610
Score = 26.2 bits (55), Expect = 7.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 34 AAEHQGQLXRGGAADSSLHVLGTREPS 114
+ +H+G G A+DS + + REPS
Sbjct: 424 SGDHEGACELGSASDSKMAAMFVREPS 450
>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1063
Score = 25.8 bits (54), Expect = 9.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 149 EQPDFPIENPQQFILDLLKFV 211
+ PD ++ P+QF+LD+ K V
Sbjct: 892 DNPDAILDRPEQFLLDVSKIV 912
>SB_407| Best HMM Match : DnaJ (HMM E-Value=0.0039)
Length = 106
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 155 PDFPIENPQQFILDLLKFVREEVK 226
PD+PI +P + + DLL+ ++EV+
Sbjct: 33 PDWPIRDPIRLLKDLLETWKKEVE 56
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,428,484
Number of Sequences: 59808
Number of extensions: 195799
Number of successful extensions: 478
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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