Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30875X
         (352 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    56   9e-09
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    56   9e-09
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    56   9e-09
AF039035-1|AAY86250.1|   39|Caenorhabditis elegans Hypothetical ...    31   0.23 
Z74472-6|CAA98947.1| 1025|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AF022982-3|AAB69932.1|  670|Caenorhabditis elegans Hypothetical ...    27   5.0  
AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine r...    26   6.6  
Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical p...    26   8.7  
AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical ...    26   8.7  

>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
            F18C12.2b protein.
          Length = 2271

 Score = 55.6 bits (128), Expect = 9e-09
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = +2

Query: 2    DNSTRAELQDVLQNTKANYXEEGPLI-APFTYSAHASLLSVGGVYIXIYNEQPDFPIENP 178
            DN TRAE+ + ++  + +      L  A F  S H + L VG ++I IYNEQP F +  P
Sbjct: 1663 DNGTRAEVLEFVERHRTSNEPTSELYGAEFELSVHKNELIVGDIFIRIYNEQPTFALHEP 1722

Query: 179  QQFILDLLKFVRE 217
            ++  +DLL ++++
Sbjct: 1723 KKVAIDLLDYIKK 1735



 Score = 33.9 bits (74), Expect = 0.033
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = +1

Query: 268  LTALANVIIKNPGVEINCIGQFGLI 342
            +TALAN++  NPGVEI  IG F L+
Sbjct: 1779 MTALANLVSANPGVEILLIGNFPLL 1803



 Score = 33.9 bits (74), Expect = 0.033
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +2

Query: 113  LSVGGVYIXIYNEQPDFPIENPQQFILDLLKFVRE 217
            L VGGV++ +Y E P F + +P+ F  +L++ V E
Sbjct: 2008 LVVGGVFVRLYVENPGFNVRHPKLFSTELIEKVLE 2042


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
            F18C12.2a protein.
          Length = 2279

 Score = 55.6 bits (128), Expect = 9e-09
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = +2

Query: 2    DNSTRAELQDVLQNTKANYXEEGPLI-APFTYSAHASLLSVGGVYIXIYNEQPDFPIENP 178
            DN TRAE+ + ++  + +      L  A F  S H + L VG ++I IYNEQP F +  P
Sbjct: 1663 DNGTRAEVLEFVERHRTSNEPTSELYGAEFELSVHKNELIVGDIFIRIYNEQPTFALHEP 1722

Query: 179  QQFILDLLKFVRE 217
            ++  +DLL ++++
Sbjct: 1723 KKVAIDLLDYIKK 1735



 Score = 33.9 bits (74), Expect = 0.033
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +2

Query: 113  LSVGGVYIXIYNEQPDFPIENPQQFILDLLKFVRE 217
            L VGGV++ +Y E P F + +P+ F  +L++ V E
Sbjct: 2016 LVVGGVFVRLYVENPGFNVRHPKLFSTELIEKVLE 2050


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
            protein RME-8 protein.
          Length = 2279

 Score = 55.6 bits (128), Expect = 9e-09
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = +2

Query: 2    DNSTRAELQDVLQNTKANYXEEGPLI-APFTYSAHASLLSVGGVYIXIYNEQPDFPIENP 178
            DN TRAE+ + ++  + +      L  A F  S H + L VG ++I IYNEQP F +  P
Sbjct: 1663 DNGTRAEVLEFVERHRTSNEPTSELYGAEFELSVHKNELIVGDIFIRIYNEQPTFALHEP 1722

Query: 179  QQFILDLLKFVRE 217
            ++  +DLL ++++
Sbjct: 1723 KKVAIDLLDYIKK 1735



 Score = 33.9 bits (74), Expect = 0.033
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +2

Query: 113  LSVGGVYIXIYNEQPDFPIENPQQFILDLLKFVRE 217
            L VGGV++ +Y E P F + +P+ F  +L++ V E
Sbjct: 2016 LVVGGVFVRLYVENPGFNVRHPKLFSTELIEKVLE 2050


>AF039035-1|AAY86250.1|   39|Caenorhabditis elegans Hypothetical
           protein C53A3.3 protein.
          Length = 39

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 324 DAVYFYAWIFNNDISESCQSMRY 256
           DAV++ AWI +ND S+SC    +
Sbjct: 11  DAVFYVAWILSNDDSKSCHEENF 33


>Z74472-6|CAA98947.1| 1025|Caenorhabditis elegans Hypothetical
           protein F23H12.6 protein.
          Length = 1025

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 348 AEYQTELTDAVYFYAWIFNNDISE 277
           AEY  +L D +Y YA I N  I E
Sbjct: 306 AEYADQLHDTIYLYALILNKTIEE 329


>AF022982-3|AAB69932.1|  670|Caenorhabditis elegans Hypothetical
           protein T23B12.6 protein.
          Length = 670

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +2

Query: 71  PLIAPFTYSAHASLLSVGGVYIXIYNEQPDFPIEN 175
           PLI   T     S  S G VY       PD P+EN
Sbjct: 105 PLIRRLTLCEELSSTSCGSVYFCGMIPPPDMPLEN 139


>AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine
           receptor, class v protein13 protein.
          Length = 350

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 235 HVAFNFFPNEFQQIQYELLWVLNRKVRLFVVY 140
           +V +N   + F  I   LLW+ +  +R +V+Y
Sbjct: 269 YVLYNLLSDLFASINPYLLWIFSDSLRKYVLY 300


>Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 271 SKHALWLHSLHGHVAFNFFPNEFQ 200
           S+H +WL + +GH   N FP  ++
Sbjct: 554 SEHFVWLDAGYGHANENHFPYSYK 577


>AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 271 SKHALWLHSLHGHVAFNFFPNEFQ 200
           S+H +WL + +GH   N FP  ++
Sbjct: 554 SEHFVWLDAGYGHANENHFPYSYK 577


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,670,111
Number of Sequences: 27780
Number of extensions: 143672
Number of successful extensions: 408
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)