Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30875X
         (352 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    45   1e-05
At3g18030.1 68416.m02291 halotolerance protein (HAL3A) identical...    29   0.66 
At3g59790.1 68416.m06672 mitogen-activated protein kinase, putat...    29   0.87 
At1g48605.1 68414.m05436 halotolerance protein (HAL3B) contains ...    28   1.5  
At3g54940.3 68416.m06091 cysteine proteinase, putative contains ...    27   2.7  
At4g37390.1 68417.m05294 auxin-responsive GH3 family protein sim...    27   3.5  
At2g26310.1 68415.m03157 expressed protein                             26   6.1  
At1g42470.1 68414.m04897 patched family protein similar to SP|O1...    26   6.1  
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n...    26   8.1  
At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim...    26   8.1  

>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
            protein contains Pfam profile PF00226: DnaJ domain
          Length = 2554

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
 Frame = +2

Query: 2    DNSTRAELQDVLQNTKANYXEEGPL----IAPFTYSAHASLLSVGGVYIXIYNEQPDFPI 169
            +++TR+EL + +   +A    +G         F+Y A +  + VG VY+ +YN+QPD  I
Sbjct: 1869 NSATRSELLNFVDEQRACQCPDGSYDLKNAQSFSYDALSKEVFVGNVYLKVYNDQPDSEI 1928

Query: 170  ENPQQFILDLLKFVREEVKGDM 235
              P+ F   L+ F+   V  ++
Sbjct: 1929 SEPESFCNALIDFISSLVHTEL 1950



 Score = 33.9 bits (74), Expect = 0.031
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 119  VGGVYIXIYNEQPDFPIENPQQFILDLL 202
            VGG+Y+  + + P FP+ NP++F+  LL
Sbjct: 2245 VGGIYVRRFLKDPKFPLRNPKRFLEGLL 2272


>At3g18030.1 68416.m02291 halotolerance protein (HAL3A) identical to
           GB:AAD51616 from [Arabidopsis thaliana]; similar to
           Halotolerance protein Hal3b (SP:P94063)[Arabidopsis
           thaliana]; contains Pfam PF02441: Flavoprotein
          Length = 209

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 126 PPTDRRLACAEYVKGAISGPS 64
           PP  +RLAC +Y  GA++ PS
Sbjct: 167 PPIKKRLACGDYGNGAMAEPS 187


>At3g59790.1 68416.m06672 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK10) mitogen-activated protein
           kinase (MAPK)(AtMPK10), PMID:12119167
          Length = 393

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +2

Query: 74  LIAPFTYSAHASLLSVGGVYIXIYNEQPDFPIE---NPQQFILDLLKFVREEVKGDMT 238
           L+    Y+A   + SVG +++ I N +P FP +   N  + +L+L+    EE  G ++
Sbjct: 232 LLGSSDYTAAIDVWSVGCIFMEIMNREPLFPGKDQVNQLRLLLELIGTPSEEELGSLS 289


>At1g48605.1 68414.m05436 halotolerance protein (HAL3B) contains
           Pfam PF02441: Flavoprotein; identical to Halotolerance
           protein Hal3b (SP:P94063)[Arabidopsis thaliana]
          Length = 201

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 126 PPTDRRLACAEYVKGAISGPS 64
           PP  ++LAC +Y  GA++ PS
Sbjct: 159 PPIKKKLACGDYGNGAMAEPS 179


>At3g54940.3 68416.m06091 cysteine proteinase, putative contains
           similarity to cysteine proteinase GI:479060 from
           [Glycine max]
          Length = 368

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 165 LLRTHNSSYWIC*NSFGKK 221
           +LR  N  YWI  NS+GKK
Sbjct: 319 ILRLSNKPYWIIKNSWGKK 337


>At4g37390.1 68417.m05294 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 603

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 2   DNSTRAELQDVLQNTKANYXEEGPLIAPFTYSAHASLLSVGGVYIXIYNE 151
           D +  AELQ  ++N    + E+G  +    Y+++A   ++ G Y+ IY E
Sbjct: 449 DKTDEAELQKAVENASRLFAEQGTRV--IEYTSYAETKTIPGHYV-IYWE 495


>At2g26310.1 68415.m03157 expressed protein
          Length = 398

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 280 ANVIIKNPGVEINCIGQFGLIFR 348
           A ++  NP  + NC+  FG  FR
Sbjct: 305 ARLVKANPKTDFNCLNDFGSFFR 327


>At1g42470.1 68414.m04897 patched family protein similar to
           SP|O15118 Niemann-Pick C1 protein precursor from Homo
           sapiens (GB:AAB63982) (GI:2276463); contains Pfam
           profile PF02460 Patched family
          Length = 1272

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 315 YFYAWIFNNDISESCQSMRYGSTRSMVMSPLTSSRTNF 202
           Y+    F   + ESC+++++GS+ S  +  L +   NF
Sbjct: 131 YYITDDFGAGMYESCKNVKFGSSNSRALDFLGAGAKNF 168


>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) nearly
            identical to retinoblastoma-related protein [Arabidopsis
            thaliana] GI:8777927; contains Pfam profiles: PF01858
            retinoblastoma-associated protein A domain, PF01857
            retinoblastoma-associated protein B domain
          Length = 1013

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = -2

Query: 294  NNDISESCQSMRYGSTRSMVMSPLTSSRTNFSRSNMNCCGFSIGKSGCSLYMXMYTPPTD 115
            NN  S   +++ + +   MV   + ++  N    N N  G     SG +    + T PTD
Sbjct: 955  NNSSSNRKRTLNFDAEAGMVSDSMVANSLNLQNQNQNQNGSDASSSGGA--APLKTEPTD 1012


>At2g23170.1 68415.m02768 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 595

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 2   DNSTRAELQDVLQNTKANYXEEGPLIAPFTYSAHASLLSVGGVYIXIYNE 151
           D +  AELQ  ++N      E+G  +    Y+++A   ++ G Y+ IY E
Sbjct: 442 DKTDEAELQSAVENASLLLGEQGTRV--IEYTSYAETKTIPGHYV-IYWE 488


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,176,834
Number of Sequences: 28952
Number of extensions: 131043
Number of successful extensions: 395
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)