Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30873
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    33   0.055
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    31   0.22 
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    28   1.6  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   4.7  
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T...    26   6.3  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 32.7 bits (71), Expect = 0.055
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = -3

Query: 185 SNPRSPLSPFSPGNLGIPEGP*SPFCPGAPN----PVAPFSP 72
           S P+ P++P +P    +P+ P +P  P AP+    PVAP +P
Sbjct: 573 SVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAP 614



 Score = 29.1 bits (62), Expect = 0.67
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 185 SNPRSPLSPFSPGNLGIPEGP*SPFCPGAPN-PVAPFSP 72
           S P+ P++P +P    +P+ P  P  P AP+ P  P +P
Sbjct: 603 SVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAP 641



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 185 SNPRSPLSPFSPGNLGIPEGP*SPFCPGAPN-PVAPFSP 72
           S P+ P +P  P    +P+ P  P  P AP+ P  P +P
Sbjct: 633 SVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAP 671


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +1

Query: 469 EVSQVYREWKVKEGNWYDRSKWTSRSAWSTMR*SRLLNRNFIGTTQSKRSRPTM*TQSRQ 648
           + S +   WK+K G+  D S W  RSA++     RLL +  +   +       +   S Q
Sbjct: 529 QFSLILSPWKIKNGSIDDFSVW--RSAFANDALDRLLEKVILPKLEKLMDEELVIDPSNQ 586

Query: 649 IMGWIFFIVHRWQ 687
            +  IFFI+  W+
Sbjct: 587 DLE-IFFIILSWK 598


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 519 IPISLFHLPFPVYLGDLLVPGN 454
           IP+    +P+PV L DL +PG+
Sbjct: 419 IPLECISIPYPVILPDLEIPGS 440


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 45   WYYWGKRRSRREGGHWVWCT 104
            +YY G  +     GHWVW T
Sbjct: 1071 FYYDGPNKDGLASGHWVWGT 1090


>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
           Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 73  GEKGATGFGAPGQKGDQG 126
           G  GA+G G+ G++GD+G
Sbjct: 171 GAGGASGIGSSGRRGDRG 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,088
Number of Sequences: 5004
Number of extensions: 55636
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)