Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30873
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950... 31 0.70
07_03_1160 - 24430240-24431268 29 2.8
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 29 3.7
10_08_0185 + 15578607-15578845,15580422-15580536,15580656-155807... 29 3.7
08_01_0889 + 8753877-8754236,8754995-8755054,8755174-8755250,875... 29 3.7
09_06_0260 - 21911358-21911438,21911715-21911828,21911911-219120... 28 6.5
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 28 8.6
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497... 28 8.6
06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909 28 8.6
04_04_1666 + 35202970-35203163,35203615-35203677,35204834-35205815 28 8.6
>02_02_0369 -
9505330-9505652,9507262-9507532,9507649-9507690,
9508416-9508458,9508853-9508860
Length = 228
Score = 31.5 bits (68), Expect = 0.70
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 179 PRSPLSPFSPGNLGIPEGP*SPFCPGAPNPVAP 81
PR P+ P LG+P+ P +P PG P+ P
Sbjct: 84 PRLPILPTPGMPLGVPQVPGAPLMPGVRPPILP 116
>07_03_1160 - 24430240-24431268
Length = 342
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = -3
Query: 182 NPRSPLSPFSPGNLGIPEGP*SPFCPGAPNPVAPFSP 72
NP P P P IP GP P P PNP P P
Sbjct: 219 NPNGPSIPNQPPQ-PIPNGPIKPDQPPQPNPDMPPKP 254
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -3
Query: 182 NPRSPLSPFSPGNLGIPEGP*SPFCPGAPNPVAPFSP 72
NP P P P P+GP P P PNP P P
Sbjct: 247 NPDMPPKPDQPPQ-PCPDGPPKPDQPPQPNPNGPPKP 282
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -3
Query: 182 NPRSPLSPFSPGNLGIPEGP*SPFCPGAPNPVAPFSP 72
NP P P P P GP P P PNP P P
Sbjct: 275 NPNGPPKPDQPPQPN-PNGPSKPDQPPRPNPDMPPKP 310
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -3
Query: 179 PRSPLSPFSPGNLGIPEGP*SPFCPGAPNPVAPFSP 72
P P PF P LG+P GP P P + P P
Sbjct: 513 PLMPPPPFGP--LGLPPGPMQPIGPNMSHSPGPLGP 546
>10_08_0185 +
15578607-15578845,15580422-15580536,15580656-15580745,
15581935-15582033,15582154-15582258
Length = 215
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +2
Query: 467 KRSPRYTGNGR*KREIGMTGQS--GLPGAPGAPCVSQDFLTGILLVRHSQREVVPQCEPS 640
+R+ R +G G ++G G S G+ G P A + F T + + VVP E
Sbjct: 61 RRAARLSGGGEGGLDVGSGGFSEFGVDGGPAAKALQPKFNTIVANISTRTGLVVPHIELK 120
Query: 641 HV 646
H+
Sbjct: 121 HI 122
>08_01_0889 +
8753877-8754236,8754995-8755054,8755174-8755250,
8755481-8755622,8755736-8755772,8755852-8755921,
8756021-8756212,8756321-8756413,8756545-8756773,
8756861-8756944,8757041-8757192,8757279-8757375,
8757576-8757725,8757813-8757890,8757982-8758104,
8758169-8758315,8758418-8758472,8758807-8758874
Length = 737
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 544 SWKSTLTCHTNFPLSPSIPCIPGRPLGPGKPLAPVK 437
SW +NF L P+ P +P +GPG LAP +
Sbjct: 543 SWAPVFVRQSNFKL-PADPSVPVIMIGPGTGLAPFR 577
>09_06_0260 -
21911358-21911438,21911715-21911828,21911911-21912033,
21912342-21912419,21912498-21912647,21913505-21913601,
21913679-21913860,21913899-21913982,21914243-21914303,
21914414-21914506,21914588-21914782,21914937-21915006,
21915536-21915572,21915654-21915737,21915828-21915885,
21916008-21916084,21916185-21916244,21916325-21916687
Length = 668
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 544 SWKSTLTCHTNFPLSPSIPCIPGRPLGPGKPLAPVK 437
SW +NF L P+ P +P +GPG LAP +
Sbjct: 499 SWAPIFVRQSNFKL-PTDPTVPIIMIGPGTGLAPFR 533
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -3
Query: 185 SNPRSPLSPFSPGNLGIPEGP*SPFCPGAPNPVAP 81
+N S LSP P G P P P PG P P P
Sbjct: 912 ANTASALSPPPPRPPGAPPPPPPPGKPGGPPPPPP 946
>09_04_0695 -
19547101-19548010,19548089-19548587,19549461-19549728,
19551025-19551687,19551849-19552060,19552203-19552593,
19552659-19553107,19553454-19553790
Length = 1242
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 134 PEGP*SPFCPGAPNPVAPFSP 72
P GP +P P +P PVAP P
Sbjct: 509 PLGPVAPIGPVSPGPVAPLGP 529
>06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909
Length = 627
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 182 NPRSPLSPFSPGNLGIPEGP*SPFCPGAP 96
+PR P++P+ PG++ + P P G P
Sbjct: 159 SPRPPVAPYPPGSMHMMPPPLGPMMRGPP 187
>04_04_1666 + 35202970-35203163,35203615-35203677,35204834-35205815
Length = 412
Score = 27.9 bits (59), Expect = 8.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 129 GTLITFLPWCTKPSGPLLSSI 67
G ++ L WC K GPL +S+
Sbjct: 271 GVMLVVLSWCVKRRGPLFASV 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,140,671
Number of Sequences: 37544
Number of extensions: 390149
Number of successful extensions: 1142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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