Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30873
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.96 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    24   1.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   6.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   6.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 423  KGDRGFTGARGFPGPRGLPGIQGMEG 500
            K  + FT   G PGP G+     MEG
Sbjct: 1127 KPQKPFTSPGGIPGPNGIKMPSFMEG 1152


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 279 MKGNKGQA-AELVYGAKGEPGPRGLPGN 359
           M+ N+ Q  AE +  A+  PGP G+PG+
Sbjct: 313 MRKNRFQKIAESMKTARENPGPPGVPGD 340



 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 447 ARGFPGPRGLPGIQG 491
           AR  PGP G+PG  G
Sbjct: 328 ARENPGPPGVPGDHG 342


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 279 MKGNKGQA-AELVYGAKGEPGPRGLPGN 359
           M+ N+ Q  AE +  A+  PGP G+PG+
Sbjct: 313 MRKNRFQKIAESMKTARENPGPPGVPGD 340



 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 447 ARGFPGPRGLPGIQG 491
           AR  PGP G+PG  G
Sbjct: 328 ARENPGPPGVPGDHG 342


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 279 MKGNKGQA-AELVYGAKGEPGPRGLPGN 359
           M+ N+ Q  AE +  A+  PGP G+PG+
Sbjct: 252 MRKNRFQKIAESMKTARENPGPPGVPGD 279



 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 447 ARGFPGPRGLPGIQG 491
           AR  PGP G+PG  G
Sbjct: 267 ARENPGPPGVPGDHG 281


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 380 VYAW*TIISWQTTRSWF 330
           VY+W    SW+ T S+F
Sbjct: 219 VYSWEQNRSWRITHSYF 235


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 380 VYAW*TIISWQTTRSWFSF 324
           VY+W    SW+ T ++F F
Sbjct: 201 VYSWAKNDSWRITHNFFYF 219


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 490 PCIPGRPLGPG 458
           PC P  P GPG
Sbjct: 393 PCTPSPPRGPG 403


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 699 WAFSLPSMYNKEYPSHN 649
           W F++P+MY K+   +N
Sbjct: 661 WNFTIPNMYFKDVFIYN 677


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 699 WAFSLPSMYNKEYPSHN 649
           W F++P+MY K+   +N
Sbjct: 661 WNFTIPNMYFKDVFIYN 677


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 61  KGDRGEKGATGFGAPGQKGD 120
           +G  G +G TGF    + GD
Sbjct: 92  RGRGGNRGRTGFNNKNKDGD 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,960
Number of Sequences: 438
Number of extensions: 4289
Number of successful extensions: 21
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)