Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30873
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37410.2 68415.m04588 mitochondrial import inner membrane tra...    39   0.004
At2g37410.1 68415.m04587 mitochondrial import inner membrane tra...    39   0.004
At1g64450.1 68414.m07306 proline-rich family protein contains pr...    34   0.083
At4g20800.1 68417.m03019 FAD-binding domain-containing protein s...    29   4.1  
At1g73860.1 68414.m08552 kinesin motor protein-related similar t...    29   4.1  
At1g47450.1 68414.m05260 expressed protein                             28   5.5  
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr...    28   5.5  
At3g24550.1 68416.m03083 protein kinase family protein contains ...    28   7.2  
At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR...    27   9.5  

>At2g37410.2 68415.m04588 mitochondrial import inner membrane
           translocase (TIM17) nearly identical to SP|Q9SP35
           Mitochondrial import inner membrane translocase subunit
           TIM17 {Arabidopsis thaliana}
          Length = 243

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +3

Query: 420 EKGDRGFTGARGFPGPRGLPGIQGMEGERGKLV*QVKVDFQERLE-HHALVKTS*PEFYW 596
           + G +G  G +G  G  G+PG+QGM G +G  + Q++   Q R E  +    +S     W
Sbjct: 147 DPGMQGMPGMQGMQGMPGMPGMQGMPGMQGMQMGQMQSQAQIRSESQNQNTASSSSSSSW 206

Query: 597 YDTVKEKSSHNVNP 638
           +  + +K    V P
Sbjct: 207 FGGLFDKKKEEVQP 220


>At2g37410.1 68415.m04587 mitochondrial import inner membrane
           translocase (TIM17) nearly identical to SP|Q9SP35
           Mitochondrial import inner membrane translocase subunit
           TIM17 {Arabidopsis thaliana}
          Length = 243

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +3

Query: 420 EKGDRGFTGARGFPGPRGLPGIQGMEGERGKLV*QVKVDFQERLE-HHALVKTS*PEFYW 596
           + G +G  G +G  G  G+PG+QGM G +G  + Q++   Q R E  +    +S     W
Sbjct: 147 DPGMQGMPGMQGMQGMPGMPGMQGMPGMQGMQMGQMQSQAQIRSESQNQNTASSSSSSSW 206

Query: 597 YDTVKEKSSHNVNP 638
           +  + +K    V P
Sbjct: 207 FGGLFDKKKEEVQP 220


>At1g64450.1 68414.m07306 proline-rich family protein contains
           proline rich extensins, INTERPRO:IPR0002965
          Length = 342

 Score = 34.3 bits (75), Expect = 0.083
 Identities = 23/44 (52%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -3

Query: 185 SNPRSPLSPFSPGNLG---IPEGP*SPFCPGAP--NPVAPFSPR 69
           S PR+P SP  PGN G   IP  P SP  P  P  NP AP  PR
Sbjct: 194 SFPRNPGSPEFPGNPGAPIIPRNPGSPEFPINPPRNPGAPVIPR 237



 Score = 31.5 bits (68), Expect = 0.58
 Identities = 18/38 (47%), Positives = 19/38 (50%)
 Frame = -3

Query: 182 NPRSPLSPFSPGNLGIPEGP*SPFCPGAPNPVAPFSPR 69
           NP SP    +PG    P  P SP  PG  NP AP  PR
Sbjct: 180 NPGSPDFSGNPGPPSFPRNPGSPEFPG--NPGAPIIPR 215



 Score = 31.1 bits (67), Expect = 0.77
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -3

Query: 179 PRSPLSPFSPGNLGIPEGP*SPFCPGAP----NPVAPFSPR 69
           PR+P SP+ PG    PE P  P  PG+P    NP  P  PR
Sbjct: 160 PRNPDSPYFPG---YPESPDLPGNPGSPDFSGNPGPPSFPR 197



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 179 PRSPLSPFSPGNLGIPEGP*SPFCPGAP-NPVAPFSP 72
           P SP+ P  P     P  P SP+ PG P +P  P +P
Sbjct: 145 PDSPIIPGPPDFTVTPRNPDSPYFPGYPESPDLPGNP 181



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 182 NPRSPLSPFSPGNLGIPEGP*SPFCPGAP-NPVAPFSP 72
           NP  P  P +PG+   P  P +P  P  P +P  P +P
Sbjct: 189 NPGPPSFPRNPGSPEFPGNPGAPIIPRNPGSPEFPINP 226


>At4g20800.1 68417.m03019 FAD-binding domain-containing protein
           similar to SP|P93479 Reticuline oxidase precursor (EC
           1.5.3.9) (Berberine-bridge-forming enzyme) {Papaver
           somniferum}; contains Pfam profile PF01565: FAD binding
           domain
          Length = 528

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 556 CSRRSWKSTLTCHTNFPLSPSIPCIPGRPLGP 461
           C   SW +T T   N+P+  S   +  RP GP
Sbjct: 333 CYEMSWINTTTFWQNYPVGTSTSVLLDRPSGP 364


>At1g73860.1 68414.m08552 kinesin motor protein-related similar to
           kinesin-C GB:AAF04841 from [Strongylocentrotus
           purpuratus]
          Length = 1030

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 185 SNPRSPLSPFSPGNLGIPEGP*SPFCPGAP-NPVAPFSP 72
           S PRSP SPFSP  L + +   +      P +P +PFSP
Sbjct: 15  STPRSPFSPFSP--LSVDDRHRNHADTKTPRSPFSPFSP 51


>At1g47450.1 68414.m05260 expressed protein
          Length = 169

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +2

Query: 593 LVRHSQREVVPQCEPSHVKLWDGYSLLYIDGNEKAHNQDLGYA 721
           ++    RE++   +  H +L +G+S +Y+ GN  A ++D+ Y+
Sbjct: 105 IINECCREILKMGKDCHFRLVEGWSAMYVYGNSIA-SKDIPYS 146


>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
           protein kinase family protein contains leucine
           rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to leucine-rich
           repeat transmembrane protein kinase 2 [Zea mays]
           gi|3360291|gb|AAC27895
          Length = 768

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 176 RSPLSPFSPGNLGIPEGP*SPFCPGAPNPVAPFSP 72
           R+P  P  P   G+P  P +PF P  P    P SP
Sbjct: 263 RAPPVPRIPPVSGVPPAPFAPFAPLQPQQHPPPSP 297


>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = -3

Query: 179 PRSPLSPFSPGNLGIP---EGP*SPFCPGAPNPVAPFSPR 69
           P S   P  PG+L  P     P +P  P  P+P  P +PR
Sbjct: 61  PPSLPPPSPPGSLTPPLPQPSPSAPITPSPPSPTTPSNPR 100


>At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 776

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -1

Query: 160 LSHQVILVYLRDLDHLF---ALVHQTQW 86
           L HQ +L+ + DLD +     LV QTQW
Sbjct: 290 LKHQKVLIIIDDLDDIMVLDTLVGQTQW 317


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,168,989
Number of Sequences: 28952
Number of extensions: 304012
Number of successful extensions: 958
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)