Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30871
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 173 2e-44
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 110 2e-25
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 106 2e-24
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 97 2e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 63 3e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 60 2e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 60 4e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 1e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 36 0.007
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.084
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.11
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.45
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.1
SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces ... 27 3.1
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.2
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 26 4.2
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 26 4.2
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 26 5.5
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.3
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 25 7.3
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.3
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 25 7.3
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 25 9.6
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 25 9.6
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 25 9.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 173 bits (420), Expect = 2e-44
Identities = 78/84 (92%), Positives = 80/84 (95%)
Frame = +2
Query: 2 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 181
AQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NRE
Sbjct: 58 AQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNRE 117
Query: 182 KMTQIMFETFNTPAMYVAIQAVLS 253
KMTQI+FETFN PA YVAIQAVLS
Sbjct: 118 KMTQIIFETFNAPAFYVAIQAVLS 141
Score = 172 bits (419), Expect = 3e-44
Identities = 85/97 (87%), Positives = 89/97 (91%)
Frame = +1
Query: 256 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTT 435
YASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+T
Sbjct: 143 YASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFST 202
Query: 436 TAEREIVRDIKEKLCYVALDFEQERPPLHPAAPSRSL 546
TAEREIVRDIKEKLCYVALDFEQE L AA S SL
Sbjct: 203 TAEREIVRDIKEKLCYVALDFEQE---LQTAAQSSSL 236
Score = 89.0 bits (211), Expect = 5e-19
Identities = 42/48 (87%), Positives = 43/48 (89%)
Frame = +3
Query: 513 TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHE 656
TAA SSSLEKSYELPDGQVITIGNERFR PEALFQPS LG+E GIHE
Sbjct: 229 TAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHE 276
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 110 bits (264), Expect = 2e-25
Identities = 48/84 (57%), Positives = 66/84 (78%)
Frame = +1
Query: 256 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTT 435
YAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ +
Sbjct: 148 YASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVS 207
Query: 436 TAEREIVRDIKEKLCYVALDFEQE 507
+AE+EIVR+IKEK CYVA DF E
Sbjct: 208 SAEKEIVREIKEKCCYVASDFRSE 231
Score = 91.1 bits (216), Expect = 1e-19
Identities = 40/85 (47%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANR 178
AQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+
Sbjct: 62 AQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNK 121
Query: 179 EKMTQIMFETFNTPAMYVAIQAVLS 253
EK+ + +ET N PA+ ++Q VL+
Sbjct: 122 EKIAEYFYETLNVPALSFSLQPVLA 146
Score = 50.8 bits (116), Expect = 2e-07
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = +3
Query: 543 SYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIH 653
+Y+LPD Q IT+G E F PE LF P +G EA G+H
Sbjct: 244 TYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLH 280
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 106 bits (255), Expect = 2e-24
Identities = 46/82 (56%), Positives = 62/82 (75%)
Frame = +1
Query: 256 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTT 435
YA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F
Sbjct: 143 YAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNR 202
Query: 436 TAEREIVRDIKEKLCYVALDFE 501
TA+ E VR++KEKLCYV+ D E
Sbjct: 203 TADFETVREMKEKLCYVSYDLE 224
Score = 97.1 bits (231), Expect = 2e-21
Identities = 40/84 (47%), Positives = 63/84 (75%)
Frame = +2
Query: 2 AQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANRE 181
A++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANRE
Sbjct: 58 AEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANRE 117
Query: 182 KMTQIMFETFNTPAMYVAIQAVLS 253
KM + MFE + +YVAIQAVLS
Sbjct: 118 KMCETMFERYGFGGVYVAIQAVLS 141
Score = 54.8 bits (126), Expect = 1e-08
Identities = 22/41 (53%), Positives = 30/41 (73%)
Frame = +3
Query: 534 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHE 656
L ++Y LPDG+VI +G+ER+ CPE LFQP +G E G+ E
Sbjct: 236 LMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSE 276
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 97.1 bits (231), Expect = 2e-21
Identities = 40/76 (52%), Positives = 52/76 (68%)
Frame = +2
Query: 26 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 205
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 206 TFNTPAMYVAIQAVLS 253
+FN +Y+A+QAVL+
Sbjct: 149 SFNCAGLYIAVQAVLA 164
Score = 66.9 bits (156), Expect = 2e-12
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Frame = +1
Query: 274 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAER 447
TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER 239
Query: 448 EIVRDIKEKLCYVALDFEQE 507
IKE+ CYV D +E
Sbjct: 240 -----IKEECCYVCPDIVKE 254
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 63.3 bits (147), Expect = 3e-11
Identities = 29/73 (39%), Positives = 41/73 (56%)
Frame = +2
Query: 23 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 202
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 203 ETFNTPAMYVAIQ 241
E+ PA Y+A Q
Sbjct: 123 ESLRCPATYLAKQ 135
Score = 33.1 bits (72), Expect = 0.036
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 516 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 620
++ ++ E +E PDG + G ER++ PE LF P
Sbjct: 254 SSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
Score = 32.3 bits (70), Expect = 0.063
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +1
Query: 253 AYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 423
A+ASG+ T ++D G S IY+G+ L +G + D L + L ++ +
Sbjct: 140 AFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDKNF 196
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 60.5 bits (140), Expect = 2e-10
Identities = 26/72 (36%), Positives = 43/72 (59%)
Frame = +2
Query: 38 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 217
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 218 PAMYVAIQAVLS 253
P++ I + S
Sbjct: 145 PSVAYGIDGLFS 156
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/79 (24%), Positives = 36/79 (45%)
Frame = +1
Query: 271 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAERE 450
++GIVL+ G+ SH +P+ G + R+ G + YL+K+ + SF
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPS 224
Query: 451 IVRDIKEKLCYVALDFEQE 507
+ C+V+ D+ +
Sbjct: 225 QAELLMHDHCHVSSDYTHD 243
Score = 29.1 bits (62), Expect = 0.59
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 585 ERFRCPEALFQPSFLGMEACGIHE 656
E+ R PE +F PS +G++ GI E
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILE 617
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 59.7 bits (138), Expect = 4e-10
Identities = 28/87 (32%), Positives = 52/87 (59%)
Frame = +1
Query: 280 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 459
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 460 DIKEKLCYVALDFEQERPPLHPAAPSR 540
+IKE +CYV+ +F+++ H S+
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSK 243
Score = 34.3 bits (75), Expect = 0.016
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3
Query: 564 QVITIGNERFRCPEALFQPSFLGMEACGIHE 656
QV+ + NERF PE LF PS + + GI E
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPE 302
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 51.6 bits (118), Expect = 1e-07
Identities = 21/67 (31%), Positives = 39/67 (58%)
Frame = +2
Query: 47 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 226
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 227 YVAIQAV 247
Y+ QAV
Sbjct: 134 YLTKQAV 140
Score = 39.5 bits (88), Expect = 4e-04
Identities = 19/37 (51%), Positives = 21/37 (56%)
Frame = +3
Query: 516 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSF 626
A +SS K +E PDG G ERFR E LF PSF
Sbjct: 271 AKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSF 307
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 35.5 bits (78), Expect = 0.007
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +2
Query: 38 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 205
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 206 TFNTPAMYVAIQAVL 250
P +A + ++
Sbjct: 172 ECQVPGFTIAYEPLM 186
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.084
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 98 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 241
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.5 bits (68), Expect = 0.11
Identities = 14/63 (22%), Positives = 32/63 (50%)
Frame = +1
Query: 241 SRALAYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 420
S ++ +G + V+D G + + EG +P++ ++++ G D+T MK+L
Sbjct: 281 SLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSH 340
Query: 421 YSF 429
+ +
Sbjct: 341 FPY 343
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.45
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +2
Query: 221 AMYVAIQAVLSRTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 346
A + + RTR + PPV+C TP P C K H P
Sbjct: 615 ASFEELPCTCGRTR-LYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +2
Query: 218 PAMYVAIQAVLSRTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 355
P A + + P VP S P+ P P PS++ P PS
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +2
Query: 203 ETFNTPAMYVAIQAVLSRTRPVVPPVSCWTPATVSPTPCPSTKDT 337
+T ++ + S T P S TPA V P P PST T
Sbjct: 815 KTSQASSILPTVPRTTSYTSPYATTSSHITPADVHPLPPPSTSTT 859
>SPAC664.14 |amt2||ammonium transporter Amt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 512
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -1
Query: 348 VGECVSFVDGHGVGDTVAGVQHDTGGTTGRVREST--AWMATYMAGVLNVSNMIWVIF 181
+G CVSF + G ++A Q T G G +R +A Y G N+ +++ F
Sbjct: 86 LGLCVSFFQWYFWGYSLAFSQTGTSGYIGNLRHFAFIRTLADYSPGSNNIPELVFANF 143
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 140 LLTEAPLNPKANREKMTQIMFETFN 214
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 26.2 bits (55), Expect = 4.2
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Frame = +1
Query: 442 EREIVRDIKEKL--CYVALDFEQERPPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSS 615
E E+ + +L C L E ER + R LTN + L TK S + L
Sbjct: 177 EHEMQESLAVRLADCEEQLARETERQEQYEVEIQRHLTNQHQLEIELESTKASHTENLGE 236
Query: 616 NPRSW 630
R+W
Sbjct: 237 LTRNW 241
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +1
Query: 397 MKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQERPPLHPAAPSRS 543
+K+L + + + R++ DIK L D++ ++ PLH ++ S
Sbjct: 263 IKVLRDTLRNHWVSTTRDLKADIKSFLSMATTDYQLQKNPLHGSSEPSS 311
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 495 LRAGKATAASSSSLEKSYELPDGQV 569
L K+T ASSSS+EK + GQ+
Sbjct: 270 LHLAKSTGASSSSVEKIHAYLSGQI 294
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +1
Query: 157 PQPQGQQREDDPDHVRNIQHARHVRRHPSRALAYASGRTTGIVLDSG 297
P GQ+ ++ Q ++H RR +A A +S TT + G
Sbjct: 488 PSSTGQEPTTPSTPAKSAQSSKHARRPSKQASAPSSPGTTSAAVPGG 534
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.4 bits (53), Expect = 7.3
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +1
Query: 457 RDIKEKLCYVALDFEQERPPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSW 630
R+I++K + + E E+ L + +++N P R + +DS A++L+S SW
Sbjct: 429 REIRQKEAKLKSEQEMEKQDLSLSWQD-TMSN-PQDRKFAQDVRDSAARQLTSETPSW 484
>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 296 PESSTIPVVRPDAYARARLGWRRTWR 219
PE + ++R D+Y R GW R R
Sbjct: 611 PEGVRVNIMRDDSYYRQNRGWYRNNR 636
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 25.4 bits (53), Expect = 7.3
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +2
Query: 218 PAMYVAIQAVLSRTRPVVPPVSCWT 292
P +Y ++L +P+V ++CWT
Sbjct: 454 PELYPYFLSLLDSKKPLVRTITCWT 478
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Frame = +3
Query: 324 LRRIRTPPRHPASGLS----RSRPHRLPH 398
+R++R P ASG++ +PHR PH
Sbjct: 70 MRKLRAKPVRTASGIAVVAVMCKPHRCPH 98
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 9.6
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 361 LDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQERP 513
LD+ R L K +T + SFT +EI IK +L A E+ P
Sbjct: 322 LDMTDRFLPRLRTKHITPKLLSFTPYTAQEISTIIKARLKTAATTSEKNNP 372
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 25.0 bits (52), Expect = 9.6
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 532 PSRSLTNFPTVRSSL--SETKDSVAQRLSSNPRSWVWKLAAST 654
P+ T F V L SET +SV R S + +WKL T
Sbjct: 216 PTNKETQFLAVGGMLKFSETTESVFMRTSGRNQIQLWKLENKT 258
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,047
Number of Sequences: 5004
Number of extensions: 58916
Number of successful extensions: 256
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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