Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30871
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             106   2e-25
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.5  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   5.9  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  106 bits (254), Expect = 2e-25
 Identities = 49/49 (100%), Positives = 49/49 (100%)
 Frame = +3

Query: 510 ATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHE 656
           ATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHE
Sbjct: 3   ATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHE 51


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +1

Query: 511 PPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPR 624
           PP    +     +  P   S LS T  ++A+ L   PR
Sbjct: 678 PPARSPSSQAQASQCPQTASLLSSTHSTLARSLMEGPR 715


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 110  LRVAPEEHPVLLTEAPLNPKANREKM 187
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 289 PARYRWYDRTRTREHGLD 236
           P  Y+W  R+ TRE  +D
Sbjct: 82  PISYKWITRSGTREQFID 99


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
 Frame = +3

Query: 339 TP-PRHPASGLSRSRPHRLPHEDPHRARLLVHYH 437
           TP P H   G   S  H  PH     A    H H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQH 444


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +2

Query: 491 LTSSRKGHRCIQQLPREVLRTSRRSGHHYRKRKIPLPRGSLPTLVLGYG 637
           LT+   G+ C++  P   +   RR  H      IP+P+ +   ++  YG
Sbjct: 24  LTAKLLGN-CVRVSPVITIEPRRRKFHKPITLTIPVPQAANKGMINQYG 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,626
Number of Sequences: 438
Number of extensions: 4419
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)