Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30870
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 108 1e-24
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 60 4e-10
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 49 9e-07
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 42 1e-04
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 39 7e-04
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 34 0.021
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 32 0.083
SPBC83.13 |||mitochondrial tricarboxylic acid transporter|Schizo... 32 0.083
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 31 0.19
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 31 0.25
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 29 1.0
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 28 1.4
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 28 1.8
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 27 2.4
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 2.4
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 27 3.1
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 5.5
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 5.5
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 26 7.2
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 26 7.2
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 26 7.2
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 108 bits (259), Expect = 1e-24
Identities = 53/83 (63%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
Frame = +2
Query: 257 SAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 433
SAAVSKTA APIERVKLL+Q Q + + RYKGI + F R E+G++S WRGN A
Sbjct: 37 SAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTA 96
Query: 434 NVIRYFPTQALNFAFKDKYKQVF 502
NV+RYFPTQALNFAFKDK+K++F
Sbjct: 97 NVLRYFPTQALNFAFKDKFKKMF 119
Score = 72.1 bits (169), Expect = 8e-14
Identities = 36/62 (58%), Positives = 45/62 (72%), Gaps = 2/62 (3%)
Frame = +1
Query: 583 SLCFVYPLDFARTRLAADV--GKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGI 756
SL FVY LD+ARTRLA D K G+R+F+GL + K ++SDGL GLYRGFG SV GI
Sbjct: 146 SLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGI 205
Query: 757 II 762
++
Sbjct: 206 VV 207
Score = 29.9 bits (64), Expect = 0.44
Identities = 19/83 (22%), Positives = 36/83 (43%)
Frame = +2
Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 436
+ A S V ++ + L S + ++++ G+VD + + + GL +RG +
Sbjct: 142 AGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPS 201
Query: 437 VIRYFPTQALNFAFKDKYKQVFL 505
V+ + L F D K V L
Sbjct: 202 VVGIVVYRGLYFGMYDTLKPVVL 224
Score = 25.8 bits (54), Expect = 7.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 664 FSGLGNCISKIFKSDGLIGLYRG 732
+ G+G C + +G+I L+RG
Sbjct: 71 YKGIGECFKRTAAEEGVISLWRG 93
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 60.1 bits (139), Expect = 4e-10
Identities = 31/80 (38%), Positives = 49/80 (61%)
Frame = +2
Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 436
+A VS+TAV+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+RGN N
Sbjct: 30 AATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGTN 82
Query: 437 VIRYFPTQALNFAFKDKYKQ 496
+R FP A+ FA + KQ
Sbjct: 83 CLRAFPYGAVQFATFNMLKQ 102
Score = 34.3 bits (75), Expect = 0.021
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = +2
Query: 254 FSAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 433
F+ + +T P + ++ QV + YK I A I K +G+ F+RG +
Sbjct: 235 FTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSAIFHIYKTEGINGFFRGYSS 291
Query: 434 NVIRYFPTQALNF 472
N+++ P ++ +
Sbjct: 292 NMLKIIPVMSITW 304
Score = 29.9 bits (64), Expect = 0.44
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 598 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGII 759
+P D R R + G G + + + I I+K++G+ G +RG+ ++ II
Sbjct: 245 FPADVLRRRFQVNRIPGIGHN-YKNIKSAIFHIYKTEGINGFFRGYSSNMLKII 297
Score = 29.1 bits (62), Expect = 0.77
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 658 REFSGLGNCISKIFKSDGLIGLYRGFGVS 744
+E++ L + + KI+ +GLIG +RG G +
Sbjct: 54 KEYTSLTSTLVKIWNREGLIGFFRGNGTN 82
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 48.8 bits (111), Expect = 9e-07
Identities = 29/93 (31%), Positives = 50/93 (53%)
Frame = +2
Query: 227 VR*GLPGWRFSAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 406
V+ G+ G + V+K+ VAP++RVK+L Q H S + A R+ G+ A I GL
Sbjct: 18 VKSGIAGGT-AGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGL 75
Query: 407 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 505
++G+ A + R FP + F ++ ++V +
Sbjct: 76 HGLYQGHTATLYRVFPYAGIKFVAYEQVRRVLI 108
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +1
Query: 595 VYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 732
+YPLD +TR+ VGK D ++G +C+ KI K++G LYRG
Sbjct: 26 LYPLDVVKTRMQLSVGKSD----YNGTFDCLKKIVKNEGPHRLYRG 67
Score = 41.5 bits (93), Expect = 1e-04
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Frame = +2
Query: 254 FSAAVSKTAVAPIERVKLL--LQVQHVSKQIAADQR-YKGIVDAFVRIPKEQGLLSFWRG 424
F + AVA I V L L V Q++ + Y G D +I K +G +RG
Sbjct: 8 FPVTFAAGAVAGISEVLTLYPLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRG 67
Query: 425 NFANVIRYFPTQALNFAFKDKYKQVFLGVLTRRRSSGVTSLV 550
++ P +AL FA D Y +++ V R+ SS S++
Sbjct: 68 ILPPILMEAPKRALKFASNDTYSKLWRKVFKRKDSSPALSIL 109
Score = 31.5 bits (68), Expect = 0.14
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +2
Query: 281 VAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 457
V P E +K+ LQ V++ SK Y G VD F +I K++ +L+ + G A + R+
Sbjct: 122 VVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNGFEATMWRHVVW 174
Query: 458 QALNFAFKDKYK 493
A F K +
Sbjct: 175 NAGYFGVIQKIR 186
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 39.1 bits (87), Expect = 7e-04
Identities = 22/85 (25%), Positives = 42/85 (49%)
Frame = +2
Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 436
S + T V P+ ++ LQ Q S A Y G +D F + K +G ++G N
Sbjct: 345 SGSTGATIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSPN 401
Query: 437 VIRYFPTQALNFAFKDKYKQVFLGV 511
+++ P+ A+++ + K+ +LG+
Sbjct: 402 LLKVAPSVAISYLVYENCKK-WLGL 425
Score = 33.1 bits (72), Expect = 0.047
Identities = 19/90 (21%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +2
Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSFWRGNFA 433
+ +V++ + P++ +K +Q +S+ Q K I+ + + + K G+ ++RG
Sbjct: 238 AGSVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGYYRGVLV 293
Query: 434 NVIRYFPTQALNFAFKDKYKQVFLGVLTRR 523
++ FP A + + K+ ++G+L R
Sbjct: 294 GILGMFPYSATDLGTFEGLKRTWIGILASR 323
Score = 32.3 bits (70), Expect = 0.083
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 592 FVYPLDFARTRL-AADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGI 756
F+YP+D + R+ +D+ +G + L N +++KS G+ G YRG V + G+
Sbjct: 245 FIYPVDTLKFRIQCSDLSRGQHGKSII-LSNA-KELYKSVGIRGYYRGVLVGILGM 298
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 34.3 bits (75), Expect = 0.021
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 601 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGI 756
P+ +TRL D G + S + +CI K + +G GLY+G S+ G+
Sbjct: 182 PIWLVKTRLQLDKKSGQAAQYRSSI-DCIIKTIRLEGFRGLYKGLSASLLGV 232
Score = 29.9 bits (64), Expect = 0.44
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 329 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 472
S I +Y G++ F + EQG++ + G A+++R P + F
Sbjct: 303 SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILF 350
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 32.3 bits (70), Expect = 0.083
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +1
Query: 670 GLGNCISKIFKSDGLIGLYRGFG 738
G+ + + ++KS+GL+GL+RGFG
Sbjct: 283 GIRHVLGGLYKSEGLLGLFRGFG 305
>SPBC83.13 |||mitochondrial tricarboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 32.3 bits (70), Expect = 0.083
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +1
Query: 589 CFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 732
C+ PL+ AR + + + KG Q G+ I I+K++G+ GLYRG
Sbjct: 220 CWNQPLEVARVEMQS-LTKGI-QHSSPGIMQTIMSIYKNNGIKGLYRG 265
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 31.1 bits (67), Expect = 0.19
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 679 NCISKIFKSDGLIGLYRGFGVSVQGIIITVPHT 777
+CI K +S+G LY+GFG + I PHT
Sbjct: 271 DCILKTIRSEGFFALYKGFGAHLARI---APHT 300
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 30.7 bits (66), Expect = 0.25
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +2
Query: 287 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 466
PI+ VK +Q ++A + YK + +I + GLL FW G + R + +
Sbjct: 223 PIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWSGATPRLARLILSGGI 276
Query: 467 NFAFKDKYKQV 499
F +K ++
Sbjct: 277 VFTVYEKVMEI 287
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 341 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 439
A Y DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +2
Query: 269 SKTAVAPIERVKLLLQVQHVSKQIAADQRYK---GIVDAFVRIPKEQGLLSFWRGNFANV 439
S VAP++ VK Q Q + G + + I +G+ +RG +
Sbjct: 19 SSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMM 78
Query: 440 IRYFPTQALNFAFKDKYKQVF 502
+ Y P+ ++ F +K K +F
Sbjct: 79 LGYLPSWSIYFVVYEKCKVLF 99
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +1
Query: 472 RLQGQVQAGVPRRVDKKTQFWRYFXXXXXXXXXXXXTSLCF--VYPLDFART 621
RLQ Q A +P V + +FWR F TS+ F P DFA T
Sbjct: 7 RLQPQRFAALPNPVTAENKFWRSFKVPVVAKEYSAITSIHFSAESPYDFAVT 58
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 679 NCISKIFKSDGLIGLYRGFGVSVQGIIITVPHT 777
N IS + +S+GL G YRG+ + G+ I +P T
Sbjct: 121 NTISTLARSEGLKGFYRGYWM---GVAIYLPTT 150
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 365 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 457
+++ + + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 664 FSGLGNCISKIFKSDGLIGLYRGFGVS 744
++ + + I I+K +G+ G +RGFGV+
Sbjct: 141 YTTIYSSIRDIWKKEGISGFFRGFGVT 167
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = -2
Query: 661 HAGHLPYRHRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRS 539
H P R R RD RS +RS R HR DY RS
Sbjct: 140 HQSRSPVRSRDRD---RSSRSSRSRHPSSRSRHRYDDYSRS 177
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +2
Query: 239 LPGWRFSAAVSKTA----VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 406
+P + S A+S A V P+E V++ LQ+Q K + Y G D +I + GL
Sbjct: 112 MPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQYGL 166
Query: 407 LSFWRG 424
+G
Sbjct: 167 SGIMKG 172
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 679 NCISKIFKSDGLIGLYRGFGVSVQGI 756
+C+ KI K++GL Y+G + + GI
Sbjct: 60 DCVKKISKNEGLAAFYKGTVLPLLGI 85
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 598 YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGF 735
YP D ++++ D + + C I+ GL G YRGF
Sbjct: 231 YPFDIVKSKIQTDGFLS--KATYKNSWQCAKGIYTKAGLRGFYRGF 274
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -3
Query: 381 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMGATAVLETAAENRQPG 241
T+ + + + WSA I +LT C SLT S+ T + + +++ G
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDIPRSIVYSQKYG 579
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 77 YEITPNLLFKNQELVFRDPPSACAATPTSTY 169
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 670 GLGNCISKIFKSDGLIGLYRGFGVSV 747
G G ++I+K G GL+ G GV +
Sbjct: 258 GAGAAAARIYKEIGFSGLWNGLGVRI 283
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 664 FSGLGNCISKIFKSDGLIGLYRG 732
F + +C K++GL GLYRG
Sbjct: 50 FPTIRSCFQNAVKNEGLKGLYRG 72
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 25.8 bits (54), Expect = 7.2
Identities = 17/81 (20%), Positives = 34/81 (41%)
Frame = +2
Query: 257 SAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 436
S+ + + +AP + +K+ +Q+ S + F +++G+ + WRGN
Sbjct: 26 SSVICRFMIAPFDVIKIRMQITQSSLR-----------PVFKETVQKEGVRALWRGNVVA 74
Query: 437 VIRYFPTQALNFAFKDKYKQV 499
+ Y A F K K +
Sbjct: 75 ELLYLVYGAAEFVAFSKLKHL 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,814
Number of Sequences: 5004
Number of extensions: 58222
Number of successful extensions: 193
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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