Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30866
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    47   4e-06
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    26   7.4  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    26   7.4  
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    26   7.4  
SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com...    26   7.4  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   7.4  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    25   9.7  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
 Frame = +3

Query: 3   NIAAIIIT-GNEKAFAAGADIKEMQNNTYSSN---TKQGFLREWE---DISNCGKPIIAA 161
           N+A +II  GN ++F++G DIK    +         +  F +E+     ++   KP++A 
Sbjct: 99  NLAKVIILKGNGRSFSSGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVVAL 158

Query: 162 VNGFALGGGCELAMLCDIIYAGEKAKFGQPES 257
           +NG  +GGG  LAM      A E   F  PE+
Sbjct: 159 MNGITMGGGSGLAMHVPFRIACEDTMFAMPET 190


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 20  HHW*REGFCGW 52
           H+W +EGFC W
Sbjct: 341 HNWGQEGFCAW 351


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 112 RKPCFVLLLYVLFCISLISAP 50
           RKP F  LLY ++  +L++ P
Sbjct: 228 RKPAFTSLLYAIYASALLATP 248


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 63  KEMQNNTYSSNTKQGFLRE-WEDISNCGKPIIAAVNG 170
           K M+++  S N K  F ++ WED+ +C K +    NG
Sbjct: 304 KYMKSDKSSKNFKPPFQKKSWEDLVDCVKTVQQLDNG 340


>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
           complex anchor subunit Tim18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 196 WQCCAISSMPAKRRNSVNPSQHW 264
           ++ C I   PA+R   ++P  HW
Sbjct: 131 FESCVIDYFPARRFKKLSPLMHW 153


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 211 SHSIASSQPPPRAKPLTAAMMGFPQLEMSS 122
           S+S  SS   P A+PLTA  +GF   +  S
Sbjct: 268 SNSAQSSLFSPTARPLTARKLGFASSQTKS 297


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +2

Query: 383 LVSKVFPVEKLLEETIKLAERIGTHSPLIVKLAKQAVNQAYEPPSNRA 526
           +V  +  V +  ++ + L E++ + SPL+ K     +++   PPS+ A
Sbjct: 286 IVQHLSLVFRCSDDPMPLYEKLASQSPLVEKTLYTLLSRHLHPPSSAA 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,642,484
Number of Sequences: 5004
Number of extensions: 83033
Number of successful extensions: 232
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)