Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30865
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 124 1e-29
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 34 0.022
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 29 0.61
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 26 5.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.7
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 7.6
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 25 7.6
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 25 7.6
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo... 25 10.0
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 25 10.0
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 25 10.0
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 124 bits (299), Expect = 1e-29
Identities = 67/94 (71%), Positives = 75/94 (79%), Gaps = 3/94 (3%)
Frame = +1
Query: 256 IGAVVDVQFED--NLPPILNALEVQ-NRSPRLXLEVAQHLGENTVRTIAMDGTEGLVRGQ 426
IGAVVD QFED +LP ILNALEV+ + RL LEVAQH+GENTVRTIAMDGTEGLVRG
Sbjct: 61 IGAVVDCQFEDADSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGT 120
Query: 427 PVLDSGSPIRIPVGAETLGRIINVIGERLTSAVP 528
V+D+GSPI IPVG TLGRI+NVIGE + P
Sbjct: 121 AVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGP 154
Score = 80.2 bits (189), Expect = 3e-16
Identities = 37/55 (67%), Positives = 43/55 (78%)
Frame = +3
Query: 510 IDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIRVVDLLAPYAKGGKIGLFG 674
+DERGPI K + IHA+AP F + S EIL TGI+VVDLLAPYA+GGKIGLFG
Sbjct: 149 VDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVVDLLAPYARGGKIGLFG 203
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 33.9 bits (74), Expect = 0.022
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +3
Query: 510 IDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIRVVDLLAPYAKGGKIGLFG 674
ID +GPI T + + +AP + + E + TG++ +D + P +G + + G
Sbjct: 143 IDGKGPIKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQRELIIG 197
Score = 30.3 bits (65), Expect = 0.27
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 352 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGERLTSAVP 528
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G + P
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 529 SQPT 540
+ T
Sbjct: 149 IKTT 152
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 29.1 bits (62), Expect = 0.61
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 346 LEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIG 504
LEVA H V +GT G+ VR + +G +RIPV + LGR+ N G
Sbjct: 64 LEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSG 113
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 543 TAAIHAEAPEFVDMSVQQEILVTGIRVVDLLAPYAKGGKIGLFG 674
T + A P +++ Q +L TG RV+D L P +GG + G
Sbjct: 216 TWPVRAARPVADNLTANQPLL-TGQRVLDALYPCVQGGTTAIPG 258
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -3
Query: 664 PIFPPLA*GASRSTTLIPVTRISCCTDMSTNSGASAWIAAVLSVGMGPRSS 512
PI P +++ +P T SC T S +G S+ ++ ++ + P S+
Sbjct: 206 PIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTST 256
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 467 PTGIRMGEPESSTGCPRTKPSVPSMAMV 384
P G +G PES+ KPS PS + +
Sbjct: 795 PLGHALGNPESNNSSNSFKPSHPSQSFL 822
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 659 LSTFGIRSEQIDDSYTSYENLLLHRHVXKLWSFGMDSSSLVGWD 528
L+ I S QID S T N++ + +L +FG D+ S+ WD
Sbjct: 170 LNPLKIESAQID-SPTGGVNVIDINPMHQLLAFGTDAGSVEFWD 212
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 195 TAAPVTSDAFSVALFTTVFVAKRPTLQT 112
T + VTS+A S A V +K+P L+T
Sbjct: 521 TESAVTSEALSAARLEAVKASKKPPLRT 548
>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
Smd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 115
Score = 25.0 bits (52), Expect = 10.0
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 86 KNIIEMFPTVCRVGRLATKTVVNNATEK---ASLVTGAAVNKRDYAAKASGKGQGKVVAV 256
K ++ R + + V TEK AS G A+NK + +K +G G V+ V
Sbjct: 51 KKLLARVKAFDRHSNMVLENVKEMWTEKKRTASGKKGKAINKDRFISKMFLRGDGVVLVV 110
Query: 257 LVP 265
+P
Sbjct: 111 RIP 113
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +3
Query: 9 DGSLRKEFVIFVTSS-ILLCC 68
DG+LR E V+ ++ S ILLCC
Sbjct: 631 DGTLRTEEVVELSESLILLCC 651
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 10.0
Identities = 32/136 (23%), Positives = 49/136 (36%), Gaps = 1/136 (0%)
Frame = -3
Query: 640 GASRSTTLIPVTRISCCTDMSTNSGASAWIAAVLSVG-MGPRSSIVRRLH**CVRGFQLP 464
G S TL + C +S N WIA S G + S++ RL ++
Sbjct: 43 GFSEYCTLFGHEKSVTCVSVSPNK---RWIATSSSDGTIKIWSALTFRLECTLFGHYRGI 99
Query: 463 PGYEWVSQSRVRVAHGLSLQYRPWQWYVQCSLXXXXXXXXXSGEIDFAPQGHLGSAASCL 284
+W + S+ + R W + +CS+ IDF P G L + S
Sbjct: 100 SQVKWATGSKYLASASDDKTIRIWDFEKRCSVRCLKGHTNYVSSIDFNPLGTLLVSGSWD 159
Query: 283 QTEHPLRHQYGNYLTL 236
+T Q G L +
Sbjct: 160 ETVRIWNLQDGTCLRM 175
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,037
Number of Sequences: 5004
Number of extensions: 59282
Number of successful extensions: 168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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