Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30865
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0902 - 7099260-7099778,7100291-7100704,7101579-7102010 31 0.64
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 31 0.84
05_04_0098 + 17982196-17982355,17982761-17982978,17983232-179834... 30 1.9
01_05_0159 + 18716055-18716272,18716900-18718529,18718622-187186... 29 2.6
10_08_0742 + 20244984-20247008 29 3.4
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 29 3.4
03_02_0325 - 7467862-7468054,7468668-7468752,7469124-7469290,747... 29 3.4
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 29 4.5
06_02_0176 + 12637287-12637376,12638108-12638280,12638631-126387... 29 4.5
04_04_0254 - 23951495-23951902,23952000-23952155,23952344-239524... 29 4.5
04_03_1017 + 21747044-21748051 29 4.5
02_05_1214 + 34976814-34979813 29 4.5
11_06_0693 - 26334574-26336121 28 5.9
07_01_0363 - 2675951-2676049,2676146-2676279,2676362-2676395,267... 28 5.9
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808... 28 7.8
09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664 28 7.8
08_01_0789 + 7640021-7640382,7643435-7643480,7644514-7644638,764... 28 7.8
06_03_0538 + 21913175-21914218 28 7.8
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171... 28 7.8
03_01_0260 - 1999462-1999488,1999748-1999930,2000940-2001146,200... 28 7.8
>01_01_0902 - 7099260-7099778,7100291-7100704,7101579-7102010
Length = 454
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 474 NPRTHHQCNRRTIDERGP--IPTDKTAAIHAEAPEFVDMSVQQEILVTGIRVVD 629
NP T H NR+ ID GP + + H + PE + +++ + G+ V +
Sbjct: 209 NPETRHIVNRKVIDALGPEGVLINIARGAHVDEPELISALLEKRLGGAGLDVFE 262
>10_08_0584 + 18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -2
Query: 443 PESSTGCPRTKPSVPSMAMVRTVFSPKCCATSKXKRGDRFCTSRAFR 303
P ++ G PR PS P + PKC + G FCT F+
Sbjct: 868 PGATAGRPRLSPSDPEVVGTEAE-CPKCAQLKLLREGAAFCTQDCFK 913
>05_04_0098 +
17982196-17982355,17982761-17982978,17983232-17983418,
17983957-17984057,17984708-17984885,17984956-17985233
Length = 373
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 410 PSVPSMAMVRTVFSPKCCATSK 345
P+ PS A VR SP+CC+ S+
Sbjct: 3 PTAPSPASVRAAASPRCCSRSR 24
>01_05_0159 +
18716055-18716272,18716900-18718529,18718622-18718693,
18718800-18719213
Length = 777
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 516 RQSFADYIDDASEGFSSHRDTNG*ARVEYGL 424
R S DY+D A +G S H+ G + YGL
Sbjct: 172 RLSKQDYVDPADQGSSDHKSIKGSLNLFYGL 202
>10_08_0742 + 20244984-20247008
Length = 674
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 433 LDSGSPIRIPVGAETLGRIINVIGERLTSAVPSQPTRLLLS 555
L+S PI+ V + +I+NV + S VP++P R L+S
Sbjct: 192 LESAQPIQAWVDYDGSAKILNVTIAPVASTVPTRPRRPLIS 232
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 504 RTIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIRVVDLLAPYAKGGKIGLF 671
+ ID PI + I + + + +E++ TGI +D++ A+G KI LF
Sbjct: 151 KPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLF 206
>03_02_0325 -
7467862-7468054,7468668-7468752,7469124-7469290,
7470130-7471133
Length = 482
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = -1
Query: 501 DYIDDASEGFSSHRDTNG*ARVEYGLPTD*AFSTVHGNGTYSVLSQVLRHLQ 346
D+ DD +EG + +D +G A + YGL TV G +VL+Q+ + L+
Sbjct: 171 DHEDDDAEGAEAEKDADGEAALSYGL-------TVASKGQEAVLAQLDKVLE 215
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = -1
Query: 648 WHKERADRRLLYQLRESPAAQTCXQTLELRHG*QQSCRLGWDRARQSFADYIDDASEGFS 469
W ERA ++Y S A + Q EL HG + S R R S + D G +
Sbjct: 284 WLDERAASSVVYVSFGSLATPSAVQMAELAHGLRDSGRFFLWVVRSSETGKLPDGFAGET 343
Query: 468 SHRDTNG 448
+ ++T G
Sbjct: 344 AAKNTTG 350
>06_02_0176 +
12637287-12637376,12638108-12638280,12638631-12638743,
12639125-12639313,12639397-12639464,12639601-12639684,
12639791-12639844,12640445-12640525,12640615-12640708,
12640830-12640903,12640976-12641086,12641299-12641355,
12641458-12641562,12641656-12641772,12641900-12642003,
12642229-12642394,12642513-12642641
Length = 602
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 530 PNRQDCCYPCRSSRVCXHVCAAGDSRNWYKSRRSARSLCQRWK 658
P++ DC Y VC H+ AAG + + + RS +WK
Sbjct: 422 PSKFDCDYAYVLGHVCYHILAAG-LNGYMATVTNLRSPVNKWK 463
>04_04_0254 -
23951495-23951902,23952000-23952155,23952344-23952485,
23952772-23953160,23953833-23953948,23954290-23954371
Length = 430
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -2
Query: 662 NLSTFGIRSEQIDDSYTSYENLLLHRHVX-KLWSFGMDSSSLVGWDGTALVNRSPITLMM 486
N T G++ +++ +L H L +F +D S + G+DGT+ ++ S + + +
Sbjct: 104 NKDTIGLKRNAFGENFHGKIGCILRNHSGISLKTFKLDYSGMCGFDGTSYLD-SWLQIAL 162
Query: 485 RPRVSAPT 462
+P + T
Sbjct: 163 KPGIEELT 170
>04_03_1017 + 21747044-21748051
Length = 335
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -2
Query: 473 SAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCCATSKXKRGDRFCTSRAFRIGG 294
S P R P+ + P + P +PS A TV P+ + R C+SRA R+ G
Sbjct: 266 STPPPPRAASPDYTPSTPPSSP-LPSAAESFTVPPPRRYHPYQRSRSGGACSSRAIRVIG 324
>02_05_1214 + 34976814-34979813
Length = 999
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +2
Query: 587 CAAGDSRNWYKSRRSARSLCQRWKDWVVW 673
C A + W ++R S+C RW + W
Sbjct: 614 CVAKYGQKWIRTRTVVDSVCPRWNEQYTW 642
>11_06_0693 - 26334574-26336121
Length = 515
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 648 WHKERADRRLLYQLRESPAAQ 586
WH A+RRLL+ L SP A+
Sbjct: 20 WHPRTAERRLLHLLHHSPPAR 40
>07_01_0363 -
2675951-2676049,2676146-2676279,2676362-2676395,
2676485-2676604,2676720-2676836,2676924-2677043,
2677129-2677218,2677313-2677438,2677566-2677619,
2677856-2677936,2678025-2678132,2678218-2678289,
2678885-2678947,2679476-2679646
Length = 462
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Frame = +2
Query: 110 TVCRVGRLATKTVVNNATEKASLVTGAA---VNKRDYAAKASGKGQGKVVAVLVP*WMFS 280
+V R R A++ N K G V KR+Y K G+ G+ W++
Sbjct: 337 SVKRETRFASRLPANEILSKIEAAAGPMGFNVQKRNYKLKLQGENPGRKACATTLSWVYR 396
Query: 281 LKT 289
LK+
Sbjct: 397 LKS 399
>12_02_0893 +
24077634-24078379,24079347-24080412,24080741-24080866,
24081278-24081384,24081720-24081744
Length = 689
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -2
Query: 506 SPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMV 384
SP+ R + AP G+ G+P++ ++PS+P +++
Sbjct: 453 SPVYAQSRSPIRAPLGVSFGDPKAQ----NSRPSIPHPSLI 489
>09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664
Length = 332
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 467 PTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSP 366
P G++ P ++ GC P +P M + R V P
Sbjct: 40 PVGVQAAFPHAAAGCAPPPPVMPVMIVYRVVQPP 73
>08_01_0789 +
7640021-7640382,7643435-7643480,7644514-7644638,
7645028-7645092,7647642-7648186
Length = 380
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 632 QIDDSYTSYENLLLHRHVXKLWSFGMDSSSLVGWDGT 522
+I+++ +S L+LH + W +D S VGW+ +
Sbjct: 133 RIEEAKSSNFMLILHHQIVNRWMNALDRFSDVGWNNS 169
>06_03_0538 + 21913175-21914218
Length = 347
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 304 LNALEVQNRSPRLXLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSP 450
L E + SP + A+HL + ++ D TE V+ V D G P
Sbjct: 233 LERFECGSWSPPPPMAPAEHLAQEVAKSSCADDTEAPVKMAFVFDHGEP 281
>05_03_0682 -
16916437-16916686,16916761-16916822,16917082-16917147,
16917606-16917737,16917925-16918026,16918146-16918343,
16918409-16918555,16918804-16918914,16919661-16920194,
16920269-16920425,16920511-16920660,16920744-16920883,
16921668-16921784,16922759-16922932,16923020-16923187,
16923323-16923464,16923610-16923728,16924997-16925098,
16925618-16925701,16926843-16927142
Length = 1084
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 368 ERTLYVPLPWTVLKA*SVGNPYSTLAHPFVSRW 466
+RT Y +PW ++ G P +A FV RW
Sbjct: 515 DRTKYPRMPWHDVQCALYGPPCRDVARHFVQRW 547
>03_01_0260 -
1999462-1999488,1999748-1999930,2000940-2001146,
2001895-2002359
Length = 293
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -2
Query: 524 TALVNRSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPS 405
+AL N S + P + AP G P ST P T+PS
Sbjct: 226 SALQNHSVYNVFSVPLIVAPVQESGGVPTRSTHTPETRPS 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,613,719
Number of Sequences: 37544
Number of extensions: 423699
Number of successful extensions: 1300
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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