Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30865
(675 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 149 2e-36
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 47 1e-05
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.069
SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79) 30 2.0
SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54) 29 4.5
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31) 28 6.0
SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24) 28 7.9
SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21) 28 7.9
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 149 bits (362), Expect = 2e-36
Identities = 71/91 (78%), Positives = 80/91 (87%)
Frame = +1
Query: 256 IGAVVDVQFEDNLPPILNALEVQNRSPRLXLEVAQHLGENTVRTIAMDGTEGLVRGQPVL 435
IGAVVDVQF+++LPPILNALEV+NR+PRL LEVAQHLGENTVRTIAMDGTEGL+RGQ +
Sbjct: 80 IGAVVDVQFDEDLPPILNALEVENRTPRLILEVAQHLGENTVRTIAMDGTEGLIRGQKCV 139
Query: 436 DSGSPIRIPVGAETLGRIINVIGERLTSAVP 528
D+G PI IPVG ETLGRIINVIGE + P
Sbjct: 140 DTGGPITIPVGPETLGRIINVIGEPIDERGP 170
Score = 101 bits (243), Expect = 4e-22
Identities = 47/55 (85%), Positives = 51/55 (92%)
Frame = +3
Query: 510 IDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIRVVDLLAPYAKGGKIGLFG 674
IDERGP+ TDK AAIHAEAPEFV+MS +QEIL TGI+VVDLLAPYAKGGKIGLFG
Sbjct: 165 IDERGPVETDKRAAIHAEAPEFVEMSTEQEILETGIKVVDLLAPYAKGGKIGLFG 219
>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 238
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/25 (76%), Positives = 23/25 (92%)
Frame = +3
Query: 600 ILVTGIRVVDLLAPYAKGGKIGLFG 674
+L TGI+V+DL+ PYAKGGKIGLFG
Sbjct: 2 VLFTGIKVIDLIEPYAKGGKIGLFG 26
>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 34.7 bits (76), Expect = 0.069
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 388 IAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGERLTSAVPSQPTR 543
+ + G + L++ G V +G+ + +PVG E LGR+++ +G + P+ TR
Sbjct: 12 VVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPTGGTR 64
Score = 32.3 bits (70), Expect = 0.37
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +3
Query: 510 IDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIRVVDLLAPYAKGGKIGLFG 674
ID +GP + A + +AP + + +E ++TGI+ VD L P +G + + G
Sbjct: 54 IDGKGPTGGTR-ARVGVKAPGIIPRTSVKEPMLTGIKAVDSLVPIGRGQRELIIG 107
>SB_58083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 727
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -3
Query: 613 PVTRISCCTDMSTNSGASAW-IAAVLSVGMGPRSSIVRRLH**CVRGFQLP 464
P R+SC +ST + +S+W I AVL + R S+V + VR FQLP
Sbjct: 291 PARRVSCSAAISTFNLSSSWLIMAVLRRPLMLRMSVVSPVS--MVRTFQLP 339
>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
Length = 308
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 506 SPITLMMRPRV-SAPTGIRMGEPESSTG 426
S +T +P SAPTGI G+P SSTG
Sbjct: 112 STLTAFGQPSTTSAPTGISFGQPTSSTG 139
>SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)
Length = 240
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/75 (25%), Positives = 28/75 (37%)
Frame = -2
Query: 482 PRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCCATSKXKRGDRFCTSRAFR 303
PR S T + S P+T P S ++T S K + K R R+ +
Sbjct: 126 PRTSPKTSSKTSPKTSPKSSPKTSPKTSSKTSLKT--SQKTSLNASRKTSRRTSLKRSLK 183
Query: 302 IGGKLSSN*TSTTAP 258
K S + T+P
Sbjct: 184 TSPKTSRKTSPKTSP 198
>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
Length = 718
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 106 SYCLQSRPFGYEDS-SKQCY*ESITGDWSRCEQT*LCSQGFRQR 234
S C + +P + +K C+ + TG WS+C +C G R+R
Sbjct: 543 SLCTEDKPSSVRNCINKACHLKWYTGQWSKCFA--MCGVGRRRR 584
>SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)
Length = 1669
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = -2
Query: 536 GWDGTALVNRSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFS 369
G+ T ++ + M R+ + R GE S GCP S+P VR S
Sbjct: 1533 GYFFTPFTDKRLYSTMSLSRMFSKLKARRGESSSDDGCPGNPTSIPCPPAVRVYTS 1588
>SB_11978| Best HMM Match : Myb_DNA-binding (HMM E-Value=8e-21)
Length = 636
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 280 FEDNLPPILNALEVQNRSPRLXLEVAQHLGENTVRTIAMDGT 405
F++++ P+LN L + +S L L ++ G N V +GT
Sbjct: 174 FQESVCPVLNTLTLHIKSSELDLNRPRNRGSNKVENGKNEGT 215
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,316,109
Number of Sequences: 59808
Number of extensions: 476340
Number of successful extensions: 1226
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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