Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30865
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   145   3e-35
AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...    38   0.005
AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical ...    38   0.005
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...    38   0.005
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    29   4.0  
AL110484-8|CAB54399.1|  274|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    28   7.0  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  145 bits (351), Expect = 3e-35
 Identities = 69/91 (75%), Positives = 77/91 (84%)
 Frame = +1

Query: 256 IGAVVDVQFEDNLPPILNALEVQNRSPRLXLEVAQHLGENTVRTIAMDGTEGLVRGQPVL 435
           IGAVVDVQF++NLPPILN LEV  RSPRL LEV+QHLG+N VR IAMDGTEGLVRGQPV 
Sbjct: 76  IGAVVDVQFDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVA 135

Query: 436 DSGSPIRIPVGAETLGRIINVIGERLTSAVP 528
           D+G PI+IPVG ETLGRI+NVIGE +    P
Sbjct: 136 DTGDPIKIPVGPETLGRIMNVIGEPIDERGP 166



 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 47/55 (85%), Positives = 51/55 (92%)
 Frame = +3

Query: 510 IDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIRVVDLLAPYAKGGKIGLFG 674
           IDERGPI +   AAIHAEAPEFV+MSV+QEILVTGI+VVDLLAPYAKGGKIGLFG
Sbjct: 161 IDERGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG 215


>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +3

Query: 510 IDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIRVVDLLAPYAKGGKIGLFG 674
           ID +GPI   + + +  +AP  +     +E +VTG++ VD L P  +G +  + G
Sbjct: 116 IDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIG 170



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +1

Query: 352 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGERLTSAVP 528
           +A +L  + V  +     + +  G  V  +G+ + +PVG   LGR+++ +G  +    P
Sbjct: 63  MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGP 121


>AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical
           protein H28O16.1c protein.
          Length = 503

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +3

Query: 510 IDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIRVVDLLAPYAKGGKIGLFG 674
           ID +GPI   + + +  +AP  +     +E +VTG++ VD L P  +G +  + G
Sbjct: 108 IDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIG 162


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +3

Query: 510 IDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIRVVDLLAPYAKGGKIGLFG 674
           ID +GPI   + + +  +AP  +     +E +VTG++ VD L P  +G +  + G
Sbjct: 143 IDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRGQRELIIG 197



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +1

Query: 352 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGERLTSAVP 528
           +A +L  + V  +     + +  G  V  +G+ + +PVG   LGR+++ +G  +    P
Sbjct: 90  MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGP 148


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 403 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVI 501
           T G+  G PVL +G P+ + +G   +G I + I
Sbjct: 59  TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGI 91


>AL110484-8|CAB54399.1|  274|Caenorhabditis elegans Hypothetical
           protein Y38E10A.8 protein.
          Length = 274

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 572 VCXHVCAAGDSRNWYKSRRSARSL-CQRWKDWV 667
           +C  +C     ++W K  R+ARS      KDW+
Sbjct: 96  ICMELCEQNTLKDWIKGNRTARSRPWMLMKDWI 128


>Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical
           protein E02H4.2 protein.
          Length = 560

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 76  LNFQKYYRNVSYCLQSRPFGYEDSSKQC 159
           L  QKYY +  Y LQS+P      +K C
Sbjct: 130 LPHQKYYNSEQYALQSQPCNQYQMNKLC 157


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = +1

Query: 400  GTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGERLTSAVPSQPTRL 546
            G +G  +GQP  D GS ++ P  +E  G   N+ G +  S VP +PT L
Sbjct: 1047 GPKGKSKGQPPGDKGSEVKKPT-SEVDGP-GNLSGTKGKSNVPLKPTDL 1093


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +3

Query: 504 RTIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIRVVDLLAPYAKGGKIGLF 671
           + ID+  P+  +    I+ +     +    +E++ TGI  +D++   A+G KI +F
Sbjct: 131 KPIDKGPPVLPEDYLDINGQPINPFNRIYPEEMIQTGISAIDVMNSIARGQKIPIF 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,239,812
Number of Sequences: 27780
Number of extensions: 344534
Number of successful extensions: 945
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)