Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30865
(675 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 122 3e-28
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 122 3e-28
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 122 3e-28
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 32 0.40
At3g16860.1 68416.m02156 phytochelatin synthetase-related contai... 30 1.6
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 29 2.8
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 29 2.8
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 29 2.8
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 29 2.8
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 29 2.8
At3g42820.1 68416.m04484 hypothetical protein hypothetical prote... 29 3.8
At1g50790.1 68414.m05712 hypothetical protein 29 3.8
At3g59010.1 68416.m06577 pectinesterase family protein contains ... 28 6.6
At3g11340.1 68416.m01379 UDP-glucoronosyl/UDP-glucosyl transfera... 27 8.7
At1g76550.1 68414.m08908 pyrophosphate--fructose-6-phosphate 1-p... 27 8.7
At1g28380.1 68414.m03487 expressed protein 27 8.7
At1g04150.1 68414.m00405 C2 domain-containing protein contains I... 27 8.7
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 122 bits (293), Expect = 3e-28
Identities = 58/86 (67%), Positives = 72/86 (83%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 IGAVVDVQFEDN--LPPILNALEVQNRSPRLXLEVAQHLGENTVRTIAMDGTEGLVRGQP 429
IGA+VDV+FED LPPI+ +LEVQ+ RL LEV+ HLG+N VRTIAMDGTEGLVRG+
Sbjct: 90 IGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRK 149
Query: 430 VLDSGSPIRIPVGAETLGRIINVIGE 507
VL++G+PI +PVG TLGRI+NV+GE
Sbjct: 150 VLNTGAPITVPVGRATLGRIMNVLGE 175
Score = 77.8 bits (183), Expect = 6e-15
Identities = 36/55 (65%), Positives = 42/55 (76%)
Frame = +3
Query: 510 IDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIRVVDLLAPYAKGGKIGLFG 674
IDERG I T+ IH +AP VD++ QEIL TGI+VVDLLAPY +GGKIGLFG
Sbjct: 177 IDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFG 231
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 122 bits (293), Expect = 3e-28
Identities = 58/86 (67%), Positives = 72/86 (83%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 IGAVVDVQFEDN--LPPILNALEVQNRSPRLXLEVAQHLGENTVRTIAMDGTEGLVRGQP 429
IGA+VDV+FED LPPI+ +LEVQ+ RL LEV+ HLG+N VRTIAMDGTEGLVRG+
Sbjct: 93 IGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRK 152
Query: 430 VLDSGSPIRIPVGAETLGRIINVIGE 507
VL++G+PI +PVG TLGRI+NV+GE
Sbjct: 153 VLNTGAPITVPVGRATLGRIMNVLGE 178
Score = 77.8 bits (183), Expect = 6e-15
Identities = 36/55 (65%), Positives = 42/55 (76%)
Frame = +3
Query: 510 IDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIRVVDLLAPYAKGGKIGLFG 674
IDERG I T+ IH +AP VD++ QEIL TGI+VVDLLAPY +GGKIGLFG
Sbjct: 180 IDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFG 234
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 122 bits (293), Expect = 3e-28
Identities = 58/86 (67%), Positives = 72/86 (83%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 IGAVVDVQFEDN--LPPILNALEVQNRSPRLXLEVAQHLGENTVRTIAMDGTEGLVRGQP 429
IGA+VDV+FED LPPI+ +LEVQ+ RL LEV+ HLG+N VRTIAMDGTEGLVRG+
Sbjct: 90 IGAIVDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRK 149
Query: 430 VLDSGSPIRIPVGAETLGRIINVIGE 507
VL++G+PI +PVG TLGRI+NV+GE
Sbjct: 150 VLNTGAPITVPVGRATLGRIMNVLGE 175
Score = 77.8 bits (183), Expect = 6e-15
Identities = 36/55 (65%), Positives = 42/55 (76%)
Frame = +3
Query: 510 IDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIRVVDLLAPYAKGGKIGLFG 674
IDERG I T+ IH +AP VD++ QEIL TGI+VVDLLAPY +GGKIGLFG
Sbjct: 177 IDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFG 231
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 510 IDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIRVVDLLAPYAKGGKIGLFG 674
ID +G + + + +AP ++ E + TG++ VD L P +G + L G
Sbjct: 387 IDGKGALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIG 441
Score = 31.1 bits (67), Expect = 0.70
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 352 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIG 504
+A +L V + G + G V +GS + +P G LGR+++ +G
Sbjct: 334 MALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMG 384
>At3g16860.1 68416.m02156 phytochelatin synthetase-related contains
Pfam PF04833: Phytochelatin synthetase-like conserved
region
Length = 653
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Frame = -2
Query: 467 PTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSP---KCCATSKXKRGDRFCTSRAFRIG 297
P + + ++G P K + S +V + P KCC + D + G
Sbjct: 374 PLRVSSSQFPDTSGLPSNKSAFASWQVVCNITQPTPPKCCVSFSSYFNDSVIPCKTCACG 433
Query: 296 GKLSSN*T---STTAPIRQLPYLAL 231
G S STT+P LPY AL
Sbjct: 434 GCSSDRVARTCSTTSPALPLPYQAL 458
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 504 RTIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIRVVDLLAPYAKGGKIGLF 671
+ ID PI + I + + + +E++ TGI +D++ A+G KI LF
Sbjct: 110 KPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLF 165
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 504 RTIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIRVVDLLAPYAKGGKIGLF 671
+ ID PI + I + + + +E++ TGI +D++ A+G KI LF
Sbjct: 110 KPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLF 165
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 504 RTIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIRVVDLLAPYAKGGKIGLF 671
+ ID PI + I + + + +E++ TGI +D++ A+G KI LF
Sbjct: 109 KPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLF 164
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 504 RTIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIRVVDLLAPYAKGGKIGLF 671
+ ID PI + I + + + +E++ TGI +D++ A+G KI LF
Sbjct: 109 KPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLF 164
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 504 RTIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIRVVDLLAPYAKGGKIGLF 671
+ ID PI + I + + + +E++ TGI +D++ A+G KI LF
Sbjct: 109 KPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLF 164
>At3g42820.1 68416.m04484 hypothetical protein hypothetical proteins
- Arabidopsis thaliana
Length = 906
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = -2
Query: 551 SSSLVGWDGTALVNRSPITLMMRPRVSAPTGIRMGEPESSTGC 423
SS +V + + +++ P RP+ P G R P GC
Sbjct: 311 SSGVVSMESISRISKDPANGTSRPKKDVPDGTRGVSPSKDMGC 353
>At1g50790.1 68414.m05712 hypothetical protein
Length = 812
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 439 SGSPIRIPVGAETLGRIINV-IGERLTSAVPSQPTRLLLSMPKL 567
S SPI++ + +L +++NV I ER A+ S+P LL P+L
Sbjct: 253 SESPIKVEIDLSSLCKLVNVWIWERF-RALQSKPNLLLKGEPRL 295
>At3g59010.1 68416.m06577 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 529
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -1
Query: 393 GNGTYSVLSQVLRHLQXQAGRSILHL 316
G+GT+ +++ L L+ +GRS++HL
Sbjct: 235 GSGTHMSVAEALASLEKGSGRSVIHL 260
>At3g11340.1 68416.m01379 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 447
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -2
Query: 326 FCTSRAFRIGGKLSSN*TSTTAPIRQLPYLALCRKPWLHS 207
F R G LS T +P+ +LPYL + PW +
Sbjct: 140 FSKFHVLREKGYLSLQETKADSPVPELPYLRMKDLPWFQT 179
>At1g76550.1 68414.m08908 pyrophosphate--fructose-6-phosphate
1-phosphotransferase alpha subunit, putative /
pyrophosphate-dependent 6-phosphofructose-1-kinase,
putative strong similarity to SP|Q41140
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase
alpha subunit (EC 2.7.1.90) (PFP) (PPI-PFK) {Ricinus
communis}; contains Pfam profile PF00365:
Phosphofructokinase
Length = 617
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 530 PNRQDCCYPCRSSRVCXHVCAAGDSRNWYKSRRSARSLCQRWK 658
P++ DC Y VC H+ AAG + + + +S +WK
Sbjct: 437 PSKFDCDYAYVLGHVCYHILAAG-LNGYMATVTNLKSPVNKWK 478
>At1g28380.1 68414.m03487 expressed protein
Length = 612
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -3
Query: 610 VTRISCCTDMSTN---SGASAWIAAVLSVGMGPRSSIVR 503
VTR SC ++STN SG + I+ LS G+ P + +
Sbjct: 498 VTRKSCWDNLSTNSRKSGVFSMISTRLSTGLSPNPATTK 536
>At1g04150.1 68414.m00405 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1012
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = +2
Query: 587 CAAGDSRNWYKSRRSARSLCQRWKDWVVW 673
C A W ++R SLC +W + W
Sbjct: 632 CVAKYGPKWVRTRTVVDSLCPKWNEQYTW 660
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,461,594
Number of Sequences: 28952
Number of extensions: 324207
Number of successful extensions: 900
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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