Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30864
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      116   2e-26
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)                   30   1.6  
SB_9471| Best HMM Match : VQ (HMM E-Value=6.2)                         30   1.6  
SB_47597| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_34699| Best HMM Match : Peptidase_S8 (HMM E-Value=1.5e-07)          30   2.1  
SB_6573| Best HMM Match : FtsX (HMM E-Value=0.27)                      30   2.1  
SB_16580| Best HMM Match : VHS (HMM E-Value=7.6)                       29   4.9  
SB_43038| Best HMM Match : AAA (HMM E-Value=0.84)                      29   4.9  
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)                   29   4.9  
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_43230| Best HMM Match : Ammonium_transp (HMM E-Value=2.6e-14)       28   6.5  
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_34887| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.95)          28   8.5  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    28   8.5  
SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  
SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)                28   8.5  
SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  116 bits (279), Expect = 2e-26
 Identities = 51/74 (68%), Positives = 64/74 (86%)
 Frame = +2

Query: 305 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLS 484
           +VRK+LQL RLRQINNGVFVRLNKAT NMLRI +PYIA+GYPNLKSVREL+YKRG+ K+ 
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVD 160

Query: 485 GQRIPITSTALLRR 526
            QR+ +T  +++ +
Sbjct: 161 KQRVALTDNSIVEK 174



 Score =  105 bits (252), Expect = 4e-23
 Identities = 47/60 (78%), Positives = 53/60 (88%)
 Frame = +1

Query: 508 HSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGG 687
           +SIVEK L KH IICVEDLIHEIFTVGE FK ASNFLWPFKL++P GG+RKKT H+V+GG
Sbjct: 169 NSIVEKVLGKHGIICVEDLIHEIFTVGEHFKEASNFLWPFKLSSPKGGFRKKTTHFVEGG 228



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 35/81 (43%), Positives = 50/81 (61%)
 Frame = +1

Query: 13  EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKE 192
           +D  K+P VPE++LK             +  L ++     K++EIFKRAE+YVKEYR KE
Sbjct: 3   QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62

Query: 193 RDEIRLARQARNRGNYYVPGE 255
            DE+R+ + A+  GN+YVP E
Sbjct: 63  VDELRMKKMAKKHGNFYVPPE 83



 Score = 35.5 bits (78), Expect = 0.043
 Identities = 18/26 (69%), Positives = 19/26 (73%)
 Frame = +3

Query: 255 AKLAFVIRIRGINQVSPKSVKFCNCL 332
           A+LAFVIRIRGIN VSPK  K    L
Sbjct: 84  ARLAFVIRIRGINGVSPKVRKILQLL 109


>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
          Length = 2153

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = -3

Query: 707 LRGYQSLPPST**MVFLRQP----PVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIML 540
           + G Q LPP T   VF +      PV +FN+KG+++L   L+ S   ++    SS  +M 
Sbjct: 552 IEGRQLLPPKTIAPVFPKVDSYLAPVPIFNIKGNQELHMALHLSDHEELEGENSSEIVMT 611

Query: 539 CL 534
            L
Sbjct: 612 SL 613


>SB_9471| Best HMM Match : VQ (HMM E-Value=6.2)
          Length = 307

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 578 KISWMRSSTQIMLCLWSLFSTMLWK*LV-YVVHSAWRIHVCI 456
           K+ W+R +  +M+ L + FS M W+ L   V  + WR  V +
Sbjct: 88  KLGWLRMAQVLMVALLATFSYMGWRHLYPAVAETGWRYEVLL 129


>SB_47597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = -2

Query: 570 MDEVLNTDNVVFMEPLLNNAVEVIGIRCPLSLANPRLYTNSRTL 439
           +D  LN   +VF E +LN+AV ++     LSL  P+ Y NS +L
Sbjct: 124 VDPTLNM--LVFGESILNDAVSIVMTNTILSLGGPK-YANSSSL 164


>SB_34699| Best HMM Match : Peptidase_S8 (HMM E-Value=1.5e-07)
          Length = 785

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 591 FSNSEDLMDEVLNTDNVVFMEPLLNNAVEVIGIRCP 484
           FS   DLM+E++N   V+F+    NN   +  + CP
Sbjct: 314 FSRVVDLMNELVNEHGVIFISSAGNNGPALSTVGCP 349


>SB_6573| Best HMM Match : FtsX (HMM E-Value=0.27)
          Length = 275

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = -2

Query: 570 MDEVLNTDNVVFMEPLLNNAVEVIGIRCPLSLANPRLYTNSRTL 439
           +D  LN   +VF E +LN+AV ++     LSL  P+ Y NS +L
Sbjct: 25  VDPTLNM--LVFGESILNDAVSIVMTNTILSLGGPK-YANSSSL 65


>SB_16580| Best HMM Match : VHS (HMM E-Value=7.6)
          Length = 264

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 636 QSNWWLAQEDHSLCRRGETLVTA 704
           + NWWL Q  +S C  GE L  A
Sbjct: 20  EKNWWLPQGTYSDCTAGEVLKAA 42


>SB_43038| Best HMM Match : AAA (HMM E-Value=0.84)
          Length = 957

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +2

Query: 287 YQPSFTEVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVY 460
           YQ   T   + + L +   IN G    +N++ VN+ R A     + YP++KSVR  +Y
Sbjct: 231 YQNGTTFFYEQVNLHKTVVINKGTDSIINES-VNLPRRARDSEKFVYPDIKSVRVTIY 287


>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
          Length = 528

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 544 IICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKT 666
           + C+   + E+ TV E F+   NFL  FK+  P     KKT
Sbjct: 344 LTCLCGDLSEMITVEEAFQMCENFLEKFKIFFPLDAPNKKT 384


>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 115 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 240
           R  AI ++RE+++R E Y +    + R+  R     R R  Y
Sbjct: 16  RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57


>SB_43230| Best HMM Match : Ammonium_transp (HMM E-Value=2.6e-14)
          Length = 246

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 562 LIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGGR 690
           LI+ IF  G  +   S++ W         GW KK ++Y DG R
Sbjct: 33  LIYSIFLTGFIYPVVSHWGWD------ANGWLKKGVYYNDGNR 69


>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 115 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 240
           R   + ++REI++R E Y +    + R+  RL    R R  Y
Sbjct: 27  RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68


>SB_34887| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.95)
          Length = 439

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 121 SAIKKKREIFKRAEQYVKEY--RIKERDEIRLARQARNRGNYYVPGEPNW 264
           + +   +++    +++ K+Y  ++ + D ++LAR  RNRG    P E  W
Sbjct: 106 NTVSLPKQLDANLKEFFKKYPRKVLQNDGLKLARHLRNRGR---PTETTW 152


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 187 KERDEIRLARQARNRGNYYVP 249
           K RD   +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503


>SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 475

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 629 LKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFS 519
           LKGH K    L+++P V  + + +S    +CLW + S
Sbjct: 239 LKGHTKEGYGLSWNPNVNGNLLSASDDHTICLWDISS 275


>SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)
          Length = 816

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 484 WTTYTNHFHSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFL 618
           WT  T+   S ++K  +K N +C+  L+ +       +K+ S  L
Sbjct: 742 WTKRTHQLLSALKKEFNKKNTVCLNSLVQKNTRKQAAYKFYSCLL 786


>SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 565 IHEIFTVGEKFKYASNFLWPFKLNN 639
           ++ + T   KF YA++ LW F  NN
Sbjct: 58  LNRVITTTGKFSYATDDLWQFSCNN 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,544,804
Number of Sequences: 59808
Number of extensions: 508341
Number of successful extensions: 1280
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)