Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30864
(709 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 111 6e-25
Z81131-4|CAD01083.1| 415|Caenorhabditis elegans Hypothetical pr... 31 0.61
AL117202-24|CAD27612.1| 565|Caenorhabditis elegans Hypothetical... 31 0.81
AL132862-14|CAB60548.1| 541|Caenorhabditis elegans Hypothetical... 30 1.9
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 28 5.7
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 28 5.7
AL034393-27|CAH19090.1| 710|Caenorhabditis elegans Hypothetical... 28 5.7
AL008866-2|CAA15508.2| 710|Caenorhabditis elegans Hypothetical ... 28 5.7
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 28 5.7
AF025450-2|AAB70936.3| 350|Caenorhabditis elegans Hypothetical ... 28 7.5
U41748-5|AAA83338.1| 364|Caenorhabditis elegans Hypothetical pr... 27 9.9
>AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7 protein.
Length = 244
Score = 111 bits (266), Expect = 6e-25
Identities = 56/133 (42%), Positives = 74/133 (55%)
Frame = +2
Query: 311 RKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQ 490
RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY+AWGYPN K++ +L+YKRG+AK+ G
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGN 161
Query: 491 RIPITSTALLRRGSINTTLSVLRXXXXXXXXXXXXXXXXVISCGPSN*TIQLVVGARRPF 670
R+PIT ++ + + L P ++
Sbjct: 162 RVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTN 221
Query: 671 IMSTGGDFGNRED 709
GGDFGNRED
Sbjct: 222 HFVEGGDFGNRED 234
Score = 99.5 bits (237), Expect = 2e-21
Identities = 43/60 (71%), Positives = 50/60 (83%)
Frame = +1
Query: 508 HSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKTIHYVDGG 687
++IVE+ L K NIIC+EDL HEI TVG FK A+NFLWPFKLNNPTGGW KKT H+V+GG
Sbjct: 168 NTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGG 227
Score = 64.1 bits (149), Expect = 9e-11
Identities = 31/79 (39%), Positives = 48/79 (60%)
Frame = +1
Query: 19 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 198
+KK+P VPE+VLK Q + + +KK + FKRAE+YV+EYR +++
Sbjct: 4 TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63
Query: 199 EIRLARQARNRGNYYVPGE 255
+RL R+A +G++YVP E
Sbjct: 64 GLRLKREAEAKGDFYVPAE 82
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +3
Query: 258 KLAFVIRIRGINQVSPKSVK 317
K+AFV+RIRGINQ+ PK K
Sbjct: 84 KVAFVVRIRGINQLHPKPRK 103
>Z81131-4|CAD01083.1| 415|Caenorhabditis elegans Hypothetical
protein T24D1.5 protein.
Length = 415
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +1
Query: 127 IKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEPNWHLSSES 282
++++R F+R EQ +++Y + R + + RQ + G NW L S++
Sbjct: 20 VEEQRRAFRRYEQQMEDYELARRIQEQENRQNEGERPDFPNGGGNWDLDSDN 71
>AL117202-24|CAD27612.1| 565|Caenorhabditis elegans Hypothetical
protein Y47D3A.30 protein.
Length = 565
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 427 VSPSNVRLGDT*HIHSSLIQTYKHTIVYLAQSKQLQNFTDFGE 299
++PS RL H H+ L Q +++ I Q K++Q F GE
Sbjct: 496 LAPSGTRLSTVRHTHTLLFQIWQYKINSFCQIKKIQFFVVCGE 538
>AL132862-14|CAB60548.1| 541|Caenorhabditis elegans Hypothetical
protein Y73F8A.20 protein.
Length = 541
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/84 (23%), Positives = 37/84 (44%)
Frame = +1
Query: 100 VTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEPNWHLSSE 279
+T KRR++ I +K+ + ++ + E + KE+D R + N + N SS
Sbjct: 438 ITKKRRNTKITRKQRLLRKVRK--SEEKEKEKDRKRAKKALIKNSNLKKKRKSNSSSSSN 495
Query: 280 SVVSTKFHRSP*SSATV*TAPNKQ 351
T +S +S V P ++
Sbjct: 496 GTTETSSTKSSSTSTKVVDVPKEK 519
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
C05C12.3 protein.
Length = 1694
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 281 PWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 373
PW P FT + V+ LF+L + ++ +F R N
Sbjct: 1360 PWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 281 PWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 373
PW P FT + V+ LF+L + ++ +F R N
Sbjct: 1360 PWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390
>AL034393-27|CAH19090.1| 710|Caenorhabditis elegans Hypothetical
protein B0019.2 protein.
Length = 710
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 481 EWTTYTNHFHSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 600
EW++ N FHSI K + K +I + + F G+K K
Sbjct: 388 EWSSLRNQFHSITTKLITKEGVI--QYAVGSDFEFGQKEK 425
>AL008866-2|CAA15508.2| 710|Caenorhabditis elegans Hypothetical
protein B0019.2 protein.
Length = 710
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 481 EWTTYTNHFHSIVEKRLHKHNIICVEDLIHEIFTVGEKFK 600
EW++ N FHSI K + K +I + + F G+K K
Sbjct: 388 EWSSLRNQFHSITTKLITKEGVI--QYAVGSDFEFGQKEK 425
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 281 PWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 373
PW P FT + V+ LF+L + ++ +F R N
Sbjct: 1347 PWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377
>AF025450-2|AAB70936.3| 350|Caenorhabditis elegans Hypothetical
protein C41H7.5 protein.
Length = 350
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 133 KKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYV-PGEPNWHLSSESVVSTKFHRS 309
K+ E + E+Y E +DE Q +NR NY + G P+ + S+ SV S K RS
Sbjct: 217 KQEENHENHEEYHVEEVSYAQDENVYEHQQQNRQNYPMHGGSPSSNYSTISVDSVKRRRS 276
>U41748-5|AAA83338.1| 364|Caenorhabditis elegans Hypothetical
protein C31H2.4 protein.
Length = 364
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 472 RQAEWTTYTNHFHSIVEKRLHKHNIICVEDL 564
R E+ T + ++ +E+RL K N+I EDL
Sbjct: 266 RSVEFLTIPSQYYDNLEERLSKTNLIVKEDL 296
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,284,953
Number of Sequences: 27780
Number of extensions: 379890
Number of successful extensions: 1144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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