Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30863
         (723 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O15945 Cluster: Aryl hydrocarbon receptor nuclear trans...    44   0.003
UniRef50_A3EY12 Cluster: Putative aryl hydrocarbon receptor nucl...    37   0.44 
UniRef50_Q6M2S7 Cluster: ABC-type transport system, involved in ...    34   4.1  

>UniRef50_O15945 Cluster: Aryl hydrocarbon receptor nuclear
           translocator homolog; n=9; Pancrustacea|Rep: Aryl
           hydrocarbon receptor nuclear translocator homolog -
           Drosophila melanogaster (Fruit fly)
          Length = 644

 Score = 44.4 bits (100), Expect = 0.003
 Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
 Frame = +2

Query: 5   PEGTHAPH--ELSDMLQILDQSGTATFEDLNINMFNSNFE 118
           P G   P   E SDMLQ+LD + T TFEDLNINMF++ FE
Sbjct: 606 PAGAGQPQGQEFSDMLQMLDHTPT-TFEDLNINMFSTPFE 644


>UniRef50_A3EY12 Cluster: Putative aryl hydrocarbon receptor nuclear
           translocatorl-like protein; n=1; Maconellicoccus
           hirsutus|Rep: Putative aryl hydrocarbon receptor nuclear
           translocatorl-like protein - Maconellicoccus hirsutus
           (hibiscus mealybug)
          Length = 362

 Score = 37.1 bits (82), Expect = 0.44
 Identities = 18/34 (52%), Positives = 27/34 (79%), Gaps = 2/34 (5%)
 Frame = +2

Query: 23  PHELSDM--LQILDQSGTATFEDLNINMFNSNFE 118
           PHELSDM  +Q+LD++ + +F+ L  NMFN++FE
Sbjct: 331 PHELSDMMVMQMLDENASTSFDAL--NMFNTSFE 362


>UniRef50_Q6M2S7 Cluster: ABC-type transport system, involved in
           lipoprotein release, permease component; n=5;
           Corynebacterium|Rep: ABC-type transport system, involved
           in lipoprotein release, permease component -
           Corynebacterium glutamicum (Brevibacterium flavum)
          Length = 853

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -2

Query: 512 NIFQAYLSLKKKLMLIFVINALLIIIEEHSSHIGMLHFISVEHNQIKS 369
           NI  A L+L   + +I +IN L + + E    IGML  + V+  Q+++
Sbjct: 725 NILYALLALSVIVAIIGIINTLALNVIERRQEIGMLRAVGVKRGQVRT 772


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 651,472,755
Number of Sequences: 1657284
Number of extensions: 12298622
Number of successful extensions: 27164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27161
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)