Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30863
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    29   0.67 
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   6.3  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
 Frame = -2

Query: 563 HEKLQLI*KEKKPFVSKNIFQAYLS-LKKKLMLIFVINALLIIIE---EHSSHIGMLHFI 396
           HE L +  ++ KP VS N F  ++S +K K+  I  +   L++ E   EH  ++ +   I
Sbjct: 14  HEFLDVSFEDIKPLVSVNGFAVFISAIKTKVKDINALKDQLVLQEVNHEHKENV-LTKKI 72

Query: 395 SVEHNQIKSQNN 360
           +    Q++S NN
Sbjct: 73  NFLEQQLQSSNN 84


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 219  SVASSAYCGSTDGMAEQFFEMSFEITTTHWRANYSKFELNMFML 88
            SV  S Y GS+  +  +   M    T T W  +Y  F + MF L
Sbjct: 1409 SVLYSLYTGSSIYLGSRLIMMLLFGTMTVWTTHYVYFWVTMFAL 1452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,836
Number of Sequences: 5004
Number of extensions: 54186
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)